Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY17_RS08015 Genome accession   NZ_CP053816
Coordinates   1799055..1800479 (+) Length   474 a.a.
NCBI ID   WP_123011449.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA7G     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1794055..1805479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY17_RS07995 (HPY17_08000) - 1794451..1795236 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY17_RS08000 (HPY17_08005) cobT 1795236..1796261 (-) 1026 WP_175246106.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY17_RS08005 (HPY17_08010) msrB 1796746..1797192 (-) 447 WP_001959623.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY17_RS08010 (HPY17_08015) - 1797538..1798911 (+) 1374 WP_000117954.1 L-cystine transporter -
  HPY17_RS08015 (HPY17_08020) sbcB 1799055..1800479 (+) 1425 WP_123011449.1 exodeoxyribonuclease I Machinery gene
  HPY17_RS08020 (HPY17_08025) - 1800511..1800885 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HPY17_RS08025 (HPY17_08030) - 1800876..1801550 (+) 675 WP_000266239.1 LrgB family protein -
  HPY17_RS08030 (HPY17_08035) cdd 1801720..1802607 (+) 888 WP_001245900.1 cytidine deaminase -
  HPY17_RS08035 (HPY17_08040) - 1802766..1803641 (+) 876 WP_123011448.1 AEC family transporter -
  HPY17_RS08040 (HPY17_08045) purT 1803795..1804970 (+) 1176 WP_000468083.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54544.91 Da        Isoelectric Point: 6.0792

>NTDB_id=447796 HPY17_RS08015 WP_123011449.1 1799055..1800479(+) (sbcB) [Vibrio cholerae strain SA7G]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTTPENLGSLAIRVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447796 HPY17_RS08015 WP_123011449.1 1799055..1800479(+) (sbcB) [Vibrio cholerae strain SA7G]
ATGCAGCAAGAACACCAGCCCACCTTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTAGCAGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCAATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGGTTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTACACCGGAGAATCTGGGCAGCTTAGCGATCCGGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989