Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoS   Type   Regulator
Locus tag   HPY17_RS04045 Genome accession   NZ_CP053816
Coordinates   856921..860265 (+) Length   1114 a.a.
NCBI ID   WP_175245957.1    Uniprot ID   -
Organism   Vibrio cholerae strain SA7G     
Function   chitin sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 851921..865265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY17_RS04020 (HPY17_04020) sucC 852042..853208 (+) 1167 WP_114813410.1 ADP-forming succinate--CoA ligase subunit beta -
  HPY17_RS04025 (HPY17_04025) sucD 853208..854080 (+) 873 WP_114707967.1 succinate--CoA ligase subunit alpha -
  HPY17_RS04030 (HPY17_04030) znuB 854187..854969 (-) 783 WP_000571528.1 zinc ABC transporter permease subunit ZnuB -
  HPY17_RS04035 (HPY17_04035) znuC 854962..855750 (-) 789 WP_175245956.1 zinc ABC transporter ATP-binding protein ZnuC -
  HPY17_RS04040 (HPY17_04040) znuA 855834..856718 (+) 885 WP_071187887.1 zinc ABC transporter substrate-binding protein ZnuA -
  HPY17_RS04045 (HPY17_04045) tfoS 856921..860265 (+) 3345 WP_175245957.1 AraC family transcriptional regulator Regulator
  HPY17_RS04050 (HPY17_04050) - 861036..861266 (+) 231 WP_000777870.1 ferrous iron transport protein A -
  HPY17_RS04055 (HPY17_04055) feoB 861263..863539 (+) 2277 WP_046121440.1 Fe(2+) transporter permease subunit FeoB -
  HPY17_RS04060 (HPY17_04060) - 863536..863766 (+) 231 WP_000602537.1 FeoC-like transcriptional regulator -
  HPY17_RS04065 (HPY17_04065) - 864028..864456 (-) 429 WP_033932801.1 HIT domain-containing protein -

Sequence

Protein


Download         Length: 1114 a.a.        Molecular weight: 126464.99 Da        Isoelectric Point: 6.7010

>NTDB_id=447789 HPY17_RS04045 WP_175245957.1 856921..860265(+) (tfoS) [Vibrio cholerae strain SA7G]
MFRTLLYGCLLNILIPSLVLALDKSMSIFYPLPIQEQGKVIVAQNLYLGSDGGIWVHDVHGKVMYFDGQNVLPRRGSVLP
QLSSHIVYANSAFWAFEQHELFRTYPGGERELMLSLTPGTQIIQMGASNGMIWMVDGENFYSYEIRSGRVESLSLHELYQ
LNSASKVVINDAQFLVSKWALATNVGVYLSDEQGFAHVKNSGKHFIQKLYFSHKRRELLVGSKRGALVIDIENKRPPLDR
IGSSHVLSIAETEKEYWIGTEDGLFVYSFITGKIVQLESNNQDGYALLGKKIYAMVNDFQGGMWIGTDKGIFYYSLFGQQ
FTRYPAQALSNDGSKTPIDKIAALNSDGDYLAITAQGLYNFNFSDELRKHLIYPGKVNDFVIAQEHLWIATEKGLVRYNL
SRRSIDTPNLPLPLLQTAIQHLSLDSDGNLWGTSDYQIWSYSLSEKNYRDYGSEWMVKAFSPSRISLLAAVKDGIVIGTE
HGAYSLLEKQIRFDFSSHRYGEILQVAEDSSGHIWLVGSYGVFQWRKEQPESVTVELIEENIQPLCIAESKQGMWLISTK
GISYYRNQELTKHFGAPYGLISNEFLSASCAVGEEQDTSSLIIGSQFGVVKTNTEELAVSNLPNIQVTFSQVSVNHTTKL
LGYRMSEPLKIAYGDSISFQFGALPSSRSQSLEYKLNDEQQWQRFDWALLNFDQLLPGKYRLKVRSANPTQRYRTEALFD
FEVLQPWYMTSIALVGYVLSVLGLLALALWWRTRMILAANRKLKAQVELKTSQLRHQSKIVLSNNHQLRKQLQLHHTILG
NVLDNIDASLRHLSSYAKVRAWSEFEAPFNKVKQELAQLHFMHRGDEDESKYHDLHLLIESALKSWQEEYSKALIKLTYS
GEPRFVEVRQFNLDVLFNAVLTDAIKRLYKHQELTIQLEVRNAQAVIVFSDFGAPIQNIDKTMVTLSGSSYPLEELVTRS
GGVLHVLALKERNVIELAWPLATLPELETIHKPEEGEQAAKVGIDEVEKEWLSKVEKLIELHYSDPNFTTSTAAQALYVS
ERSLQRRFKAATGKTFKESLNEVRLEKACQSLLSGAKIAQVAFDCGFNDPSYFSQRFKYHFGLSPSQFIEDQEN

Nucleotide


Download         Length: 3345 bp        

>NTDB_id=447789 HPY17_RS04045 WP_175245957.1 856921..860265(+) (tfoS) [Vibrio cholerae strain SA7G]
GTGTTTCGCACATTGTTGTATGGCTGCTTGCTCAATATCCTGATCCCATCCTTGGTATTGGCATTAGATAAATCTATGTC
TATTTTCTATCCTTTGCCCATTCAAGAGCAGGGGAAAGTTATTGTTGCGCAAAATCTCTACCTCGGTAGTGATGGGGGGA
TTTGGGTACATGATGTTCATGGCAAAGTGATGTACTTTGATGGACAAAACGTCTTGCCTCGTCGTGGTTCTGTTCTGCCG
CAGTTGTCCAGTCATATTGTTTATGCGAACAGTGCATTTTGGGCTTTTGAGCAACACGAGTTGTTCAGAACCTATCCCGG
GGGAGAAAGAGAGCTGATGTTGAGCTTAACTCCGGGAACGCAGATTATTCAGATGGGAGCCTCAAATGGCATGATCTGGA
TGGTCGATGGGGAAAACTTCTATAGTTATGAGATCCGAAGTGGCCGCGTCGAATCCCTCTCGTTACATGAACTTTATCAG
CTCAATAGTGCCAGCAAGGTCGTGATTAACGATGCGCAGTTTTTAGTCTCGAAATGGGCTTTAGCGACTAATGTTGGGGT
GTATTTATCTGATGAACAAGGTTTTGCCCATGTAAAAAATTCTGGCAAGCACTTTATCCAAAAGCTCTATTTTTCCCATA
AGCGGCGAGAGCTGTTAGTTGGGTCTAAACGTGGCGCGTTAGTCATTGATATTGAAAATAAACGTCCACCACTGGATAGA
ATTGGTTCCTCCCATGTCCTTTCTATTGCGGAAACCGAGAAAGAGTACTGGATCGGTACAGAAGATGGGCTCTTTGTGTA
CTCTTTTATCACCGGGAAAATCGTGCAACTTGAGAGTAACAACCAAGATGGCTATGCCTTACTGGGCAAGAAAATCTACG
CCATGGTGAATGATTTTCAAGGTGGGATGTGGATAGGAACTGATAAGGGGATTTTTTATTACTCCTTATTTGGTCAGCAG
TTTACTCGGTATCCGGCGCAAGCATTATCTAACGACGGAAGTAAAACACCGATCGATAAAATAGCCGCTCTTAACTCGGA
TGGAGACTATCTGGCGATAACCGCACAAGGCCTGTATAACTTCAATTTTTCAGATGAGCTGCGTAAGCATCTTATCTATC
CAGGTAAAGTAAATGATTTTGTGATTGCCCAAGAGCATCTCTGGATCGCGACAGAGAAAGGTCTGGTTCGTTACAATCTC
AGTCGTCGTAGTATTGATACGCCCAATTTACCGCTCCCTTTGCTACAAACGGCTATTCAGCATCTGAGCTTAGATAGTGA
CGGTAACTTATGGGGGACAAGTGATTACCAAATATGGTCATACTCACTCTCTGAAAAAAATTATCGAGATTATGGTTCTG
AATGGATGGTGAAGGCTTTTTCTCCATCACGGATCAGTCTGCTTGCCGCAGTAAAAGACGGCATAGTGATTGGGACGGAA
CATGGCGCTTATTCCCTGCTTGAAAAACAGATCCGCTTTGATTTTTCGAGTCATCGTTATGGTGAGATTTTGCAAGTTGC
TGAAGATTCTTCAGGCCACATTTGGCTTGTTGGCTCTTATGGGGTTTTTCAGTGGCGTAAAGAGCAGCCCGAATCTGTCA
CTGTCGAGTTAATTGAAGAGAATATACAGCCTTTGTGTATTGCTGAGTCTAAGCAGGGGATGTGGCTTATCTCCACCAAA
GGGATCAGTTATTACCGTAATCAAGAGCTCACTAAGCATTTTGGGGCTCCTTATGGACTGATCAGTAATGAGTTCTTGTC
TGCATCGTGTGCGGTGGGTGAGGAGCAAGATACCTCATCGTTGATCATAGGATCGCAATTTGGTGTAGTGAAAACCAATA
CAGAAGAATTAGCGGTGTCTAATTTGCCCAATATTCAGGTGACGTTTAGCCAAGTCAGCGTAAATCATACGACCAAGCTT
TTGGGGTATCGTATGTCCGAGCCACTGAAAATTGCTTATGGTGATTCGATCAGCTTTCAGTTTGGCGCTTTACCCTCTTC
ACGCAGCCAATCTTTAGAATACAAACTCAACGATGAACAGCAGTGGCAGCGCTTTGATTGGGCGCTGCTCAATTTTGATC
AACTTTTACCTGGTAAGTATCGTTTGAAAGTCCGTAGCGCCAATCCGACACAGCGATACCGAACTGAGGCCCTGTTTGAT
TTTGAAGTCTTACAGCCTTGGTATATGACCTCCATCGCGCTTGTCGGATATGTGCTGAGCGTGTTGGGGTTATTAGCACT
CGCTTTATGGTGGCGAACAAGAATGATATTGGCAGCTAACCGCAAACTCAAAGCGCAAGTGGAGCTCAAAACCAGTCAGT
TACGTCATCAAAGTAAAATTGTACTGAGCAACAACCACCAACTTCGAAAGCAACTGCAGCTCCACCATACAATTCTTGGT
AACGTGTTAGACAATATTGATGCTTCATTGCGGCACTTATCTTCCTACGCCAAAGTACGAGCATGGAGTGAATTTGAAGC
ACCGTTCAACAAGGTGAAGCAAGAGTTGGCTCAACTGCATTTTATGCATCGCGGCGATGAGGATGAAAGCAAATATCATG
ATTTGCATCTTTTGATTGAGTCTGCATTGAAGAGTTGGCAGGAAGAGTACAGTAAAGCCTTGATTAAGCTCACTTACAGC
GGTGAGCCTCGCTTTGTGGAAGTCCGACAATTCAACCTTGATGTGTTATTTAATGCTGTATTAACGGATGCGATCAAACG
TTTGTATAAGCATCAAGAATTAACCATACAACTTGAAGTGAGAAATGCGCAGGCGGTTATCGTGTTTTCTGATTTTGGTG
CCCCAATCCAAAACATAGACAAAACCATGGTGACGTTATCTGGTAGTAGTTATCCGCTTGAAGAGTTAGTCACTCGTAGT
GGTGGTGTATTGCATGTGCTCGCGTTGAAAGAGCGTAATGTGATTGAGTTAGCTTGGCCATTGGCAACCTTACCCGAGTT
AGAAACCATTCATAAACCAGAAGAAGGGGAACAGGCGGCTAAGGTTGGGATCGATGAGGTGGAGAAAGAGTGGCTAAGCA
AAGTCGAGAAACTGATTGAGCTGCATTATAGCGACCCCAATTTCACCACATCCACTGCAGCGCAGGCGCTTTATGTCTCT
GAGCGAAGTTTACAGCGTCGCTTTAAAGCCGCTACAGGAAAAACCTTCAAAGAGTCGTTAAATGAGGTTCGCTTAGAAAA
AGCGTGTCAAAGCTTATTGAGTGGGGCGAAAATCGCACAAGTTGCCTTTGATTGCGGATTTAATGATCCCTCTTATTTCA
GTCAGCGTTTCAAATATCATTTTGGATTATCACCAAGCCAATTCATCGAAGATCAAGAAAACTAA

Domains

Predicted by InterproScan.

Helix-turn-helix domain (HTH_18)

(1034-1109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tfoS Vibrio cholerae O1 biovar El Tor strain E7946

99.372

100

0.994