Detailed information NTG0447778

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: HPY17_RS01140
• Genome accession: NZ_CP053816
• Coordinates: 242833..243840 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain SA7G
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 237833..248840

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY17_RS01120 (HPY17_01120)	metJ	237837..238154 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
HPY17_RS01125 (HPY17_01125)	-	238265..239542 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
HPY17_RS01130 (HPY17_01130)	rpmE	239850..240068 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
HPY17_RS01135 (HPY17_01135)	priA	240323..242527 (+)	2205	WP_175245881.1	primosomal protein N'	-
HPY17_RS01140 (HPY17_01140)	cytR	242833..243840 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
HPY17_RS01145 (HPY17_01145)	-	244011..244562 (+)	552	WP_175245882.1	SPOR domain-containing protein	-
HPY17_RS01150 (HPY17_01150)	hslV	244699..245256 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
HPY17_RS01155 (HPY17_01155)	hslU	245322..246653 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
HPY17_RS01160 (HPY17_01160)	-	246757..247674 (+)	918	WP_175245883.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
HPY17_RS01165 (HPY17_01165)	rraA	247749..248264 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=447778 HPY17_RS01140 WP_000224452.1 242833..243840(+) (cytR) [Vibrio cholerae strain SA7G]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=447778 HPY17_RS01140 WP_000224452.1 242833..243840(+) (cytR) [Vibrio cholerae strain SA7G]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTATTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTTCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACATGATGTGCGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904