Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPY09_RS11265 Genome accession   NZ_CP053813
Coordinates   2515153..2515671 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain W7G     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2510153..2520671
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY09_RS11240 (HPY09_11300) rimM 2510262..2510816 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  HPY09_RS11245 (HPY09_11305) rpsP 2510844..2511092 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  HPY09_RS11250 (HPY09_11310) ffh 2511328..2512713 (-) 1386 WP_000462715.1 signal recognition particle protein -
  HPY09_RS11255 (HPY09_11315) - 2512926..2513720 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  HPY09_RS11260 (HPY09_11320) - 2513803..2515083 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  HPY09_RS11265 (HPY09_11325) luxS 2515153..2515671 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  HPY09_RS11270 (HPY09_11330) gshA 2515720..2517294 (-) 1575 WP_044126965.1 glutamate--cysteine ligase -
  HPY09_RS11275 (HPY09_11335) - 2517406..2520261 (-) 2856 WP_175247014.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=447756 HPY09_RS11265 WP_001130227.1 2515153..2515671(-) (luxS) [Vibrio cholerae strain W7G]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447756 HPY09_RS11265 WP_001130227.1 2515153..2515671(-) (luxS) [Vibrio cholerae strain W7G]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAACATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCTCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1