Detailed information NTG0447712

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY05_RS11400
• Genome accession: NZ_CP053810
• Coordinates: 2541205..2542212 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116739.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain W6G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2536205..2547212

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY05_RS11390 (HPY05_11450)	cysM	2537368..2538255 (+)	888	WP_175247016.1	cysteine synthase CysM	-
HPY05_RS11395 (HPY05_11455)	mutS	2538523..2541111 (+)	2589	WP_001892042.1	DNA mismatch repair protein MutS	-
HPY05_RS11400 (HPY05_11460)	rpoS	2541205..2542212 (-)	1008	WP_000116739.1	RNA polymerase sigma factor RpoS	Regulator
HPY05_RS11405 (HPY05_11465)	nlpD	2542286..2543221 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
HPY05_RS11410 (HPY05_11470)	-	2543221..2543847 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY05_RS11415 (HPY05_11475)	surE	2543840..2544592 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
HPY05_RS11420 (HPY05_11480)	truD	2544594..2545679 (-)	1086	WP_001961440.1	tRNA pseudouridine(13) synthase TruD	-
HPY05_RS11425 (HPY05_11485)	ispF	2545709..2546185 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY05_RS11430 (HPY05_11490)	ispD	2546182..2546880 (-)	699	WP_001061957.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY05_RS11435 (HPY05_11495)	ftsB	2546877..2547161 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=447712 HPY05_RS11400 WP_000116739.1 2541205..2542212(-) (rpoS) [Vibrio cholerae strain W6G]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447712 HPY05_RS11400 WP_000116739.1 2541205..2542212(-) (rpoS) [Vibrio cholerae strain W6G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTCGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAATTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAGGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTGCGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994