Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY05_RS08170 Genome accession   NZ_CP053810
Coordinates   1818028..1819452 (+) Length   474 a.a.
NCBI ID   WP_001183692.1    Uniprot ID   A0A544H367
Organism   Vibrio cholerae strain W6G     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1813028..1824452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY05_RS08150 (HPY05_08205) - 1813297..1814082 (-) 786 WP_042989966.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY05_RS08155 (HPY05_08210) cobT 1814082..1815107 (-) 1026 WP_042989964.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY05_RS08160 (HPY05_08215) msrB 1815718..1816164 (-) 447 WP_033932479.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY05_RS08165 (HPY05_08220) - 1816510..1817883 (+) 1374 WP_000117953.1 L-cystine transporter -
  HPY05_RS08170 (HPY05_08225) sbcB 1818028..1819452 (+) 1425 WP_001183692.1 exodeoxyribonuclease I Machinery gene
  HPY05_RS08175 (HPY05_08230) - 1819484..1819858 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HPY05_RS08180 (HPY05_08235) - 1819849..1820523 (+) 675 WP_000266245.1 LrgB family protein -
  HPY05_RS08185 (HPY05_08240) cdd 1820693..1821580 (+) 888 WP_001245900.1 cytidine deaminase -
  HPY05_RS08190 (HPY05_08245) - 1821739..1822614 (+) 876 WP_000462870.1 AEC family transporter -
  HPY05_RS08195 (HPY05_08250) purT 1822768..1823943 (+) 1176 WP_175246942.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54500.86 Da        Isoelectric Point: 5.9820

>NTDB_id=447701 HPY05_RS08170 WP_001183692.1 1818028..1819452(+) (sbcB) [Vibrio cholerae strain W6G]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447701 HPY05_RS08170 WP_001183692.1 1818028..1819452(+) (sbcB) [Vibrio cholerae strain W6G]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTGCCCGCTCCTGAAGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACT
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCTGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCACCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATACGCACCACTGCACCGGAAAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A544H367

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.156

100

0.992