Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   ST90729_RS05040 Genome accession   NZ_CP065480
Coordinates   962916..963986 (-) Length   356 a.a.
NCBI ID   WP_014608300.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90729     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 957916..968986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90729_RS05025 (ST90729_05015) pstB 958641..959399 (+) 759 WP_011225971.1 phosphate ABC transporter ATP-binding protein PstB -
  ST90729_RS05030 (ST90729_05020) phoU 959427..960080 (+) 654 WP_041827032.1 phosphate signaling complex protein PhoU -
  ST90729_RS05035 (ST90729_05025) - 960214..962754 (+) 2541 WP_084829600.1 M1 family metallopeptidase -
  ST90729_RS05040 (ST90729_05030) xerS 962916..963986 (-) 1071 WP_014608300.1 tyrosine recombinase XerS Machinery gene
  ST90729_RS05045 (ST90729_05035) - 964211..965200 (-) 990 WP_232970715.1 lipoate--protein ligase -
  ST90729_RS05050 (ST90729_05040) - 965550..965723 (+) 174 WP_347116116.1 hypothetical protein -
  ST90729_RS05055 (ST90729_05045) glgP 966031..968295 (-) 2265 WP_232557129.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41519.67 Da        Isoelectric Point: 9.6822

>NTDB_id=447694 ST90729_RS05040 WP_014608300.1 962916..963986(-) (xerS) [Streptococcus thermophilus strain 90729]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVAKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=447694 ST90729_RS05040 WP_014608300.1 962916..963986(-) (xerS) [Streptococcus thermophilus strain 90729]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATACAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTTAATATGGCGAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGCTA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(182-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826