Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   HPY08_RS17080 Genome accession   NZ_CP053809
Coordinates   838082..839176 (-) Length   364 a.a.
NCBI ID   WP_175242952.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 833082..844176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS17070 (HPY08_17165) - 834834..835499 (+) 666 WP_000268201.1 flagellar brake protein -
  HPY08_RS17075 (HPY08_17170) luxQ 835491..838064 (-) 2574 WP_001026311.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  HPY08_RS17080 (HPY08_17175) luxP 838082..839176 (-) 1095 WP_175242952.1 substrate-binding domain-containing protein Regulator
  HPY08_RS17085 (HPY08_17180) traF 839388..840548 (-) 1161 WP_001025858.1 conjugal transfer protein TraF -
  HPY08_RS17090 (HPY08_17185) - 840650..840967 (-) 318 WP_001273466.1 GIY-YIG nuclease family protein -
  HPY08_RS17095 (HPY08_17190) - 840977..841627 (-) 651 WP_001025631.1 YceH family protein -
  HPY08_RS17100 (HPY08_17195) - 841669..841866 (-) 198 WP_001246071.1 hypothetical protein -
  HPY08_RS17105 (HPY08_17200) - 842054..842374 (+) 321 WP_001089529.1 DUF496 family protein -
  HPY08_RS17110 (HPY08_17205) - 842787..843038 (+) 252 WP_002031501.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41196.81 Da        Isoelectric Point: 6.3129

>NTDB_id=447680 HPY08_RS17080 WP_175242952.1 838082..839176(-) (luxP) [Vibrio cholerae strain SP7G]
MKRKLISPLFLIAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQEQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQSHAPKKPYSVLYFSEGYISEARGDTFIQDMNAVHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAELKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=447680 HPY08_RS17080 WP_175242952.1 838082..839176(-) (luxP) [Vibrio cholerae strain SP7G]
ATGAAAAGAAAGCTAATATCTCCGCTGTTTCTGATAGCAGCACTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAGAACAACCCGTCATTATTTCGGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAACATCAAAGCGTTTGAAAAGCGAATGGACGCTTTGGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCGAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGACTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGTGCGCAATTATT
GGCGCAATATTACCAATCACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGATACCTTCATTCAAGATATGAACGCGGTGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAA
CAAAGTGGCTATGAAGCGACTCTAAACATCGTCAAGAATAATCCAGAAATTGGCTTTATTTACGCCTGTGCGACGGACGT
CGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTGGTCAATGGTTGGGGAGGCGGCTCGGCAG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCTGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCACGTATTGCAGAACTGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

99.451

100

0.995