Detailed information NTG0447665

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY08_RS10825
• Genome accession: NZ_CP053808
• Coordinates: 2438730..2439737 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116739.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SP7G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2433730..2444737

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY08_RS10815 (HPY08_10840)	cysM	2434893..2435780 (+)	888	WP_001914090.1	cysteine synthase CysM	-
HPY08_RS10820 (HPY08_10845)	mutS	2436048..2438636 (+)	2589	WP_001892042.1	DNA mismatch repair protein MutS	-
HPY08_RS10825 (HPY08_10850)	rpoS	2438730..2439737 (-)	1008	WP_000116739.1	RNA polymerase sigma factor RpoS	Regulator
HPY08_RS10830 (HPY08_10855)	nlpD	2439811..2440746 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
HPY08_RS10835 (HPY08_10860)	-	2440746..2441372 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY08_RS10840 (HPY08_10865)	surE	2441365..2442117 (-)	753	WP_000698374.1	5'/3'-nucleotidase SurE	-
HPY08_RS10845 (HPY08_10870)	truD	2442119..2443204 (-)	1086	WP_000129764.1	tRNA pseudouridine(13) synthase TruD	-
HPY08_RS10850 (HPY08_10875)	ispF	2443234..2443710 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY08_RS10855 (HPY08_10880)	ispD	2443707..2444405 (-)	699	WP_001061957.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY08_RS10860 (HPY08_10885)	ftsB	2444402..2444686 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=447665 HPY08_RS10825 WP_000116739.1 2438730..2439737(-) (rpoS) [Vibrio cholerae strain SP7G]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447665 HPY08_RS10825 WP_000116739.1 2438730..2439737(-) (rpoS) [Vibrio cholerae strain SP7G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAATTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTGCGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994