Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPY08_RS10685 Genome accession   NZ_CP053808
Coordinates   2412245..2412763 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2407245..2417763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS10660 (HPY08_10685) rimM 2407354..2407908 (-) 555 WP_175242700.1 ribosome maturation factor RimM -
  HPY08_RS10665 (HPY08_10690) rpsP 2407936..2408184 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  HPY08_RS10670 (HPY08_10695) ffh 2408420..2409805 (-) 1386 WP_000462715.1 signal recognition particle protein -
  HPY08_RS10675 (HPY08_10700) - 2410018..2410812 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  HPY08_RS10680 (HPY08_10705) - 2410895..2412175 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  HPY08_RS10685 (HPY08_10710) luxS 2412245..2412763 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  HPY08_RS10690 (HPY08_10715) gshA 2412812..2414386 (-) 1575 WP_000032608.1 glutamate--cysteine ligase -
  HPY08_RS10695 (HPY08_10720) - 2414498..2417353 (-) 2856 WP_175242701.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=447662 HPY08_RS10685 WP_001130227.1 2412245..2412763(-) (luxS) [Vibrio cholerae strain SP7G]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447662 HPY08_RS10685 WP_001130227.1 2412245..2412763(-) (luxS) [Vibrio cholerae strain SP7G]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTTGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTCGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1