Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY08_RS07555 Genome accession   NZ_CP053808
Coordinates   1691320..1692744 (+) Length   474 a.a.
NCBI ID   WP_175242621.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP7G     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686320..1697744
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY08_RS07535 (HPY08_07555) - 1686589..1687374 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY08_RS07540 (HPY08_07560) cobT 1687374..1688399 (-) 1026 WP_000887082.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY08_RS07545 (HPY08_07565) msrB 1689010..1689456 (-) 447 WP_175242620.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY08_RS07550 (HPY08_07570) - 1689802..1691175 (+) 1374 WP_000117953.1 L-cystine transporter -
  HPY08_RS07555 (HPY08_07575) sbcB 1691320..1692744 (+) 1425 WP_175242621.1 exodeoxyribonuclease I Machinery gene
  HPY08_RS07560 (HPY08_07580) - 1692776..1693150 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HPY08_RS07565 (HPY08_07585) - 1693141..1693815 (+) 675 WP_000266239.1 LrgB family protein -
  HPY08_RS07570 (HPY08_07590) cdd 1693985..1694872 (+) 888 WP_175242622.1 cytidine deaminase -
  HPY08_RS07575 (HPY08_07595) - 1695031..1695906 (+) 876 WP_000462870.1 AEC family transporter -
  HPY08_RS07580 (HPY08_07600) purT 1696060..1697235 (+) 1176 WP_162797042.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54537.87 Da        Isoelectric Point: 5.9006

>NTDB_id=447654 HPY08_RS07555 WP_175242621.1 1691320..1692744(+) (sbcB) [Vibrio cholerae strain SP7G]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTSPDNLGSLEIKVADK
RIEPLLFRYRARHYPQTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447654 HPY08_RS07555 WP_175242621.1 1691320..1692744(+) (sbcB) [Vibrio cholerae strain SP7G]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACTATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCCGGTATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGGTTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGTTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATTCGCACAACATCACCAGATAATCTTGGCAGCCTAGAGATTAAAGTGGCAGATAAA
CGTATCGAACCTCTGTTGTTCCGTTACCGCGCTCGCCATTACCCACAGACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.101

100

0.981