Detailed information NTG0447636

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: HPY08_RS01100
• Genome accession: NZ_CP053808
• Coordinates: 237195..238202 (+)
• Length: 335 a.a.
• NCBI ID: WP_175242460.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SP7G
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 232195..243202

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY08_RS01080 (HPY08_01080)	metJ	232199..232516 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
HPY08_RS01085 (HPY08_01085)	-	232627..233904 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
HPY08_RS01090 (HPY08_01090)	rpmE	234212..234430 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
HPY08_RS01095 (HPY08_01095)	priA	234685..236889 (+)	2205	WP_175242459.1	primosomal protein N'	-
HPY08_RS01100 (HPY08_01100)	cytR	237195..238202 (+)	1008	WP_175242460.1	DNA-binding transcriptional regulator CytR	Regulator
HPY08_RS01105 (HPY08_01105)	-	238374..238925 (+)	552	WP_001886088.1	SPOR domain-containing protein	-
HPY08_RS01110 (HPY08_01110)	hslV	239062..239619 (+)	558	WP_000208247.1	ATP-dependent protease subunit HslV	-
HPY08_RS01115 (HPY08_01115)	hslU	239685..241016 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
HPY08_RS01120 (HPY08_01120)	-	241120..242037 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
HPY08_RS01125 (HPY08_01125)	rraA	242112..242627 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37009.58 Da
• Isoelectric Point: 7.0139

>NTDB_id=447636 HPY08_RS01100 WP_175242460.1 237195..238202(+) (cytR) [Vibrio cholerae strain SP7G]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEQGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=447636 HPY08_RS01100 WP_175242460.1 237195..238202(+) (cytR) [Vibrio cholerae strain SP7G]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACTGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCAGGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGTGTACCGCAAGATCT
CTCCGTGGTCGGTTTTGATGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTCGAATTATTGCGTGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	99.701	100	0.997
cytR	Vibrio parahaemolyticus RIMD 2210633	90.419	99.701	0.901