Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsS   Type   Regulator
Locus tag   HPY07_RS16320 Genome accession   NZ_CP053807
Coordinates   557642..559702 (+) Length   686 a.a.
NCBI ID   WP_001885480.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP6G     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 552642..564702
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS16310 (HPY07_16370) - 553363..554502 (+) 1140 WP_001961810.1 exonuclease SbcCD subunit D -
  HPY07_RS16315 (HPY07_16375) - 554504..557545 (+) 3042 WP_001961811.1 AAA family ATPase -
  HPY07_RS16320 (HPY07_16380) cqsS 557642..559702 (+) 2061 WP_001885480.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  HPY07_RS16325 (HPY07_16385) cqsA 559787..560956 (-) 1170 WP_001039903.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HPY07_RS16330 (HPY07_16390) - 561153..562115 (-) 963 WP_001104014.1 TDT family transporter -
  HPY07_RS16335 (HPY07_16395) clcA 562262..563668 (-) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -

Sequence

Protein


Download         Length: 686 a.a.        Molecular weight: 78213.92 Da        Isoelectric Point: 5.2908

>NTDB_id=447629 HPY07_RS16320 WP_001885480.1 557642..559702(+) (cqsS) [Vibrio cholerae strain SP6G]
MIVSMDVIKRVYRYAEPNLSLVGWMGMLGFPAYYFIWEYWFPQDYENLGLRLAASALFAVLAFRDSLPKKWQCYLPYYYL
LTIGFCLPFFFSFMMLMNNWSTIWAMSFMASIFLHILLVHDTRVMAIQALSSIGLSYLVVYGIADSQPSTLIEWPFMPIF
LFTYVFGNLFFFRNQISHETKVSIAKTFGAGIAHEMRNPLSALKASIDVVRTMVPKPQAAAQGEYALDAQELDLLHQILN
EADDVIYSGNNAIDLLLTSIDENRVSPASFKKHSVVDVIEKAVKTFPYKNAADQHSVELEVHQPFDFFGSDTLLTYALFN
LLKNAFYYQKEHFSVRITIEQTSEQNLIRVRDNGVGIAPEMLEDIFRDFYTFGKNGSYGLGLPFCRKVMTAFGGTIRCAS
QQGQWTEFVLSFPRYDSDTVNEIKTELLKTKSLIYIGSNQAIVRELNHLAVDDEFGFTAISAQQAVRRQDYEFEFDLILL
DLDDATTQGELLPKLEGTLSFAEGCIGYVYDPGKTYAVNINRYLHIQPISIHSILRKPRKIIERLLFEQDSLSMNRNVIP
LQKSRHERRILVVDDNQSIRTFTAILLEQQGYEVVQANDGSEVLKHMESQNIDLVLMDIEMPNVGGLEATRLIRGSEHDY
KNIPIIGYTGDNSPKTLALVQTSGMNDFIVKPADRDVLLNKVAAWI

Nucleotide


Download         Length: 2061 bp        

>NTDB_id=447629 HPY07_RS16320 WP_001885480.1 557642..559702(+) (cqsS) [Vibrio cholerae strain SP6G]
GTGATAGTGAGCATGGATGTAATAAAGAGAGTGTATCGATATGCAGAACCTAATCTGTCCTTAGTTGGATGGATGGGGAT
GCTTGGCTTTCCTGCCTACTACTTTATTTGGGAATATTGGTTTCCACAGGACTATGAGAACCTAGGCTTACGCCTTGCTG
CCTCTGCGTTATTTGCAGTACTTGCATTTCGAGATTCTTTACCCAAAAAATGGCAGTGCTATTTGCCATACTATTATTTG
TTGACGATAGGTTTCTGCTTGCCTTTCTTCTTCTCTTTTATGATGTTGATGAATAACTGGTCAACAATTTGGGCGATGTC
GTTCATGGCGTCCATTTTCTTGCATATTCTCCTAGTACACGATACCAGAGTGATGGCGATACAAGCGTTGTCCTCTATTG
GATTATCCTACCTCGTTGTGTACGGTATAGCCGATTCTCAACCATCGACGTTGATCGAATGGCCATTTATGCCGATATTT
TTATTCACGTATGTGTTTGGGAATCTGTTCTTTTTTCGTAACCAGATCTCTCATGAAACCAAAGTATCGATTGCCAAAAC
GTTTGGTGCAGGGATTGCCCACGAAATGCGTAATCCACTCAGTGCCTTGAAAGCGTCGATTGATGTTGTGCGAACCATGG
TCCCCAAGCCGCAAGCAGCCGCTCAGGGAGAGTATGCTTTGGATGCGCAAGAGCTGGATCTACTGCATCAAATTTTGAAT
GAAGCTGATGATGTCATTTACTCTGGCAATAACGCGATTGATTTGCTGCTCACCTCGATTGATGAAAACCGCGTTTCGCC
GGCGAGTTTTAAAAAACACTCAGTAGTGGATGTGATTGAAAAAGCGGTGAAAACCTTCCCGTATAAAAATGCAGCGGATC
AGCACTCGGTAGAGCTTGAAGTGCATCAGCCGTTTGACTTTTTTGGCAGTGATACTCTACTGACCTATGCGTTATTTAAC
CTGTTGAAAAATGCCTTCTATTATCAAAAAGAGCATTTTTCAGTTCGTATTACCATTGAACAAACCAGTGAGCAGAACCT
TATCCGAGTCCGTGATAACGGAGTGGGGATTGCGCCAGAGATGTTGGAAGACATTTTCCGTGATTTCTATACCTTCGGTA
AAAATGGCAGCTATGGGCTAGGATTGCCATTTTGCCGCAAAGTGATGACCGCATTTGGAGGGACGATTCGCTGTGCGTCT
CAACAAGGTCAGTGGACAGAATTCGTATTGAGCTTTCCTCGTTACGATTCCGATACGGTTAACGAGATAAAAACAGAACT
GCTGAAAACCAAATCGCTCATTTATATCGGCTCAAATCAAGCTATCGTTCGAGAGTTAAATCATCTCGCGGTGGACGATG
AGTTTGGCTTTACTGCCATTTCTGCACAGCAAGCAGTAAGACGCCAAGATTATGAGTTTGAGTTCGACCTTATTTTGCTC
GACCTTGATGACGCCACTACGCAGGGAGAACTACTGCCGAAACTTGAAGGTACATTGAGTTTTGCAGAAGGCTGTATCGG
CTATGTGTATGACCCGGGTAAAACGTACGCGGTAAACATTAACCGTTATCTGCACATTCAGCCGATCAGTATTCACTCTA
TTCTCAGAAAGCCGCGGAAAATCATCGAGCGCTTGTTGTTCGAGCAAGATTCTTTATCGATGAATCGTAATGTGATCCCC
TTGCAAAAGAGTCGACATGAACGGCGTATTTTGGTGGTTGACGATAATCAATCGATCCGAACTTTTACGGCTATTTTGCT
TGAGCAACAAGGTTATGAAGTGGTGCAAGCCAACGATGGTAGTGAAGTGCTCAAGCATATGGAGAGTCAAAACATCGATT
TAGTGTTGATGGACATTGAAATGCCGAATGTTGGGGGATTAGAAGCGACGCGTTTAATTCGTGGCTCTGAGCATGATTAC
AAAAATATTCCGATCATTGGTTACACCGGTGATAACAGCCCCAAAACCTTGGCTCTGGTACAAACCTCTGGCATGAATGA
TTTCATTGTGAAGCCTGCTGACCGTGATGTATTGCTAAATAAAGTGGCAGCTTGGATATGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(312-413)

Response regulator receiver domain (Response_reg)

(570-682)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsS Vibrio cholerae strain A1552

92.566

100

0.926