Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   ST90728_RS08215 Genome accession   NZ_CP065479
Coordinates   1592921..1593652 (-) Length   243 a.a.
NCBI ID   WP_002948813.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1587921..1598652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS08190 (ST90728_08180) - 1587953..1588309 (-) 357 Protein_1561 DUF805 domain-containing protein -
  ST90728_RS08195 (ST90728_08185) - 1588528..1588818 (-) 291 WP_232087105.1 hypothetical protein -
  ST90728_RS08200 (ST90728_08190) - 1589152..1590402 (-) 1251 WP_002948806.1 glutamate-5-semialdehyde dehydrogenase -
  ST90728_RS08205 (ST90728_08195) proB 1590404..1591207 (-) 804 WP_002948808.1 glutamate 5-kinase -
  ST90728_RS08210 (ST90728_08200) - 1591328..1592918 (-) 1591 Protein_1565 ABC transporter permease -
  ST90728_RS08215 (ST90728_08205) pptA 1592921..1593652 (-) 732 WP_002948813.1 ABC transporter ATP-binding protein Regulator
  ST90728_RS08220 (ST90728_08210) - 1593925..1594658 (+) 734 Protein_1567 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 27692.52 Da        Isoelectric Point: 4.8191

>NTDB_id=447619 ST90728_RS08215 WP_002948813.1 1592921..1593652(-) (pptA) [Streptococcus thermophilus strain 90728]
MIRFEHVTKRYENKDALSDLNLEIRDGEILGLISHNGAGKTTTISILTSIIEASYGEVYVDDMALSQHRDAIKKKIAYVP
DSPDLFLNLTANDYWYFLTRIYDLEASQVEERLTDLMSTFDLTENRYNLISSFSHGMRQKVVVIDAFLVNPQIWILDEPL
TGLDPQASYDLKEAMRNHAKEGNSVLFSTHVLSVAEQICDRIGILKKGKLIFQGSIAELKHQYPDKDLETIYLEMAGRKA
EEV

Nucleotide


Download         Length: 732 bp        

>NTDB_id=447619 ST90728_RS08215 WP_002948813.1 1592921..1593652(-) (pptA) [Streptococcus thermophilus strain 90728]
ATGATTCGTTTTGAACATGTAACGAAACGTTATGAAAATAAGGATGCTCTCTCAGATCTTAATCTCGAGATTCGAGACGG
TGAAATCCTTGGTTTGATTAGTCACAATGGAGCTGGTAAAACCACTACCATTTCCATTTTGACGTCTATTATTGAAGCTA
GTTATGGAGAGGTTTACGTCGATGATATGGCCCTCAGTCAGCATCGTGATGCTATTAAGAAGAAAATAGCATATGTGCCA
GATTCACCGGACTTATTTCTAAATTTGACTGCCAATGATTACTGGTACTTTTTGACACGTATCTATGATTTGGAAGCTAG
TCAGGTTGAGGAACGTTTGACTGATCTCATGTCTACCTTTGACTTGACTGAGAATCGCTATAATCTCATTTCATCCTTCT
CTCATGGTATGCGTCAGAAGGTTGTTGTTATCGATGCTTTTCTGGTTAATCCACAGATTTGGATTTTAGATGAGCCTTTG
ACTGGTCTGGACCCACAGGCATCTTATGATTTGAAAGAAGCTATGCGTAACCATGCTAAGGAGGGCAATAGTGTGCTCTT
CTCAACCCACGTTTTAAGTGTAGCTGAACAGATCTGTGATCGCATCGGTATTTTGAAGAAAGGAAAACTCATCTTCCAAG
GGTCTATAGCTGAACTTAAGCATCAGTACCCTGACAAGGATTTGGAAACCATTTATCTAGAAATGGCTGGACGTAAGGCC
GAGGAGGTGTAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus thermophilus LMD-9

37.975

97.531

0.37
  pptA Streptococcus salivarius strain HSISS4

37.131

97.531

0.362