Detailed information    

insolico Bioinformatically predicted

Overview

Name   comD/blpH   Type   Regulator
Locus tag   ST90728_RS08090 Genome accession   NZ_CP065479
Coordinates   1565821..1566657 (+) Length   278 a.a.
NCBI ID   WP_232085771.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   phosphorylation of ComE; regulation of comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1560821..1571657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS08070 (ST90728_08065) - 1562267..1562509 (-) 243 WP_347113968.1 Blp family class II bacteriocin -
  ST90728_RS08075 - 1562760..1563161 (-) 402 WP_011226490.1 hypothetical protein -
  ST90728_RS08080 (ST90728_08070) - 1564129..1564335 (-) 207 WP_084829836.1 bacteriocin class II family protein -
  ST90728_RS08085 (ST90728_08075) comE/blpR 1564586..1565317 (+) 732 WP_002948869.1 LytTR family DNA-binding domain-containing protein Regulator
  ST90728_RS08090 comD/blpH 1565821..1566657 (+) 837 WP_232085771.1 ATP-binding protein Regulator
  ST90728_RS08095 (ST90728_08085) - 1566675..1566836 (-) 162 WP_011226496.1 ComC/BlpC family leader-containing pheromone/bacteriocin -
  ST90728_RS08100 (ST90728_08090) comB 1566851..1568218 (-) 1368 WP_084829837.1 bacteriocin secretion accessory protein Regulator
  ST90728_RS08105 (ST90728_08095) - 1568234..1570387 (-) 2154 Protein_1544 peptide cleavage/export ABC transporter -

Sequence

Protein


Download         Length: 278 a.a.        Molecular weight: 32102.72 Da        Isoelectric Point: 4.8309

>NTDB_id=447617 ST90728_RS08090 WP_232085771.1 1565821..1566657(+) (comD/blpH) [Streptococcus thermophilus strain 90728]
MFGYTLLLQSLMYLENTTHSSTLELRKLCVVISLVLFFIMIVFLERNIREMIQGQLDFQKNLQLENLYTYNKHIECLYNS
VRSFRHDYSNLLVTLRLGIDKDDMDIVKEVYDSVLQESDKRLNTRNFDLARLVNIQDNTLKSLLSAKVLQAEEEGIEAQI
SIPEPIHLIGMEILDFIIVTSIFLDNAIEGAIQTQNHKITISFWEDHRSQLLSISNTISEEQTETKTIFERGVSNKGRER
GIGLANVTEILDNYINVNLETQSNNFSFTQQLTITKKA

Nucleotide


Download         Length: 837 bp        

>NTDB_id=447617 ST90728_RS08090 WP_232085771.1 1565821..1566657(+) (comD/blpH) [Streptococcus thermophilus strain 90728]
ATGTTTGGGTACACCCTACTGTTACAGTCCCTCATGTATCTTGAAAACACTACTCACTCTTCAACTTTGGAGCTTCGAAA
ACTCTGTGTTGTTATTTCACTTGTCCTCTTCTTCATTATGATTGTCTTTTTAGAAAGAAACATTCGTGAAATGATTCAAG
GACAATTGGACTTCCAGAAAAATCTCCAGCTAGAGAATCTCTACACCTACAATAAACATATTGAATGTCTCTACAATTCT
GTTCGTAGTTTTAGACACGATTATAGTAATCTCTTAGTCACATTACGATTGGGGATAGATAAAGACGATATGGATATTGT
CAAAGAAGTCTATGATAGTGTGCTTCAAGAATCCGATAAACGATTAAATACAAGAAACTTTGACTTAGCTAGACTCGTTA
ATATTCAGGATAATACTTTGAAAAGCCTTCTGTCCGCAAAAGTTTTACAAGCAGAAGAAGAAGGTATTGAAGCTCAGATT
AGCATCCCAGAACCCATCCACTTGATTGGGATGGAGATTCTGGACTTCATTATCGTCACTTCTATTTTTTTAGATAACGC
TATTGAAGGTGCCATTCAAACTCAAAACCATAAAATTACTATTAGCTTTTGGGAAGATCATCGTTCACAGCTATTATCTA
TTAGCAATACCATAAGTGAAGAACAAACAGAAACTAAAACCATATTTGAAAGAGGTGTCTCCAACAAGGGACGAGAGCGA
GGCATTGGCCTTGCTAATGTCACAGAAATCTTAGATAACTATATCAATGTAAACTTAGAAACACAGAGTAACAATTTCTC
ATTCACACAACAATTAACAATAACTAAAAAGGCCTAA

Domains

Predicted by InterProScan.

GHKL domain (HATPase_c_5)

(171-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comD/blpH Streptococcus mutans UA159

37.956

98.561

0.374