Detailed information NTG0447617

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY07_RS11265
• Genome accession: NZ_CP053806
• Coordinates: 2513390..2514397 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116739.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SP6G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2508390..2519397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY07_RS11255 (HPY07_11265)	cysM	2509553..2510440 (+)	888	WP_001914090.1	cysteine synthase CysM	-
HPY07_RS11260 (HPY07_11270)	mutS	2510708..2513296 (+)	2589	WP_001892042.1	DNA mismatch repair protein MutS	-
HPY07_RS11265 (HPY07_11275)	rpoS	2513390..2514397 (-)	1008	WP_000116739.1	RNA polymerase sigma factor RpoS	Regulator
HPY07_RS11270 (HPY07_11280)	nlpD	2514471..2515406 (-)	936	WP_095461793.1	murein hydrolase activator NlpD	-
HPY07_RS11275 (HPY07_11285)	-	2515406..2516032 (-)	627	WP_057550676.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY07_RS11280 (HPY07_11290)	surE	2516025..2516777 (-)	753	WP_000698374.1	5'/3'-nucleotidase SurE	-
HPY07_RS11285 (HPY07_11295)	truD	2516779..2517864 (-)	1086	WP_000129764.1	tRNA pseudouridine(13) synthase TruD	-
HPY07_RS11290 (HPY07_11300)	ispF	2517894..2518370 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY07_RS11295 (HPY07_11305)	ispD	2518367..2519065 (-)	699	WP_134986894.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY07_RS11300 (HPY07_11310)	ftsB	2519062..2519346 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=447617 HPY07_RS11265 WP_000116739.1 2513390..2514397(-) (rpoS) [Vibrio cholerae strain SP6G]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447617 HPY07_RS11265 WP_000116739.1 2513390..2514397(-) (rpoS) [Vibrio cholerae strain SP6G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTCGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACAGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAATTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTGCGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994