Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   ST90728_RS07970 Genome accession   NZ_CP065479
Coordinates   1540923..1541666 (-) Length   247 a.a.
NCBI ID   WP_164178279.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1535923..1546666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS07940 (ST90728_07935) - 1536194..1537138 (-) 945 WP_096811628.1 TIGR01212 family radical SAM protein -
  ST90728_RS07945 (ST90728_07940) sepM 1537223..1538299 (-) 1077 WP_198553228.1 SepM family pheromone-processing serine protease Regulator
  ST90728_RS07950 (ST90728_07945) coaD 1538277..1538774 (-) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  ST90728_RS07955 (ST90728_07950) rsmD 1538808..1539407 (-) 600 Protein_1514 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ST90728_RS07960 (ST90728_07955) trxB 1539498..1540451 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  ST90728_RS07965 (ST90728_07960) - 1540484..1540708 (-) 225 WP_002951743.1 DUF4059 family protein -
  ST90728_RS07970 (ST90728_07965) amiE 1540923..1541666 (-) 744 WP_164178279.1 amino acid ABC transporter ATP-binding protein Regulator
  ST90728_RS07975 (ST90728_07970) - 1541666..1542412 (-) 747 WP_095559509.1 amino acid ABC transporter permease -
  ST90728_RS07980 (ST90728_07975) - 1542800..1543630 (-) 831 WP_232557037.1 transporter substrate-binding domain-containing protein -
  ST90728_RS07985 (ST90728_07980) - 1544100..1544366 (-) 267 WP_347113964.1 hypothetical protein -
  ST90728_RS07990 (ST90728_07985) dinB 1544631..1545735 (-) 1105 Protein_1521 DNA polymerase IV -

Sequence

Protein


Download         Length: 247 a.a.        Molecular weight: 27733.86 Da        Isoelectric Point: 5.4718

>NTDB_id=447615 ST90728_RS07970 WP_164178279.1 1540923..1541666(-) (amiE) [Streptococcus thermophilus strain 90728]
MISIKNLTKEFSGQKVLDGIDIDIEKGEVVALVGASGAGKSTILRCLNYLEQPDSGTIAIDDFKVDFETITKEQILTLRR
KLAMVFQQFNLFERRTALDNVKEGLKIVKKLSDDEATKIAKEELAKVGLSNRENYYPRHLSGGQKQRVALARALAMRPDV
LLLDEPTSALDPELVGEVEKSIVDAAKSGQTMILVSHDMNFIYQVADKVLFLEKGHILEQGTPDEIFNHPKEERTKEFFA
SYSKQYL

Nucleotide


Download         Length: 744 bp        

>NTDB_id=447615 ST90728_RS07970 WP_164178279.1 1540923..1541666(-) (amiE) [Streptococcus thermophilus strain 90728]
ATGATTAGTATCAAAAATTTGACCAAGGAATTTTCAGGACAAAAGGTTCTCGATGGCATCGATATTGACATTGAAAAAGG
TGAAGTTGTGGCTCTTGTTGGTGCCTCTGGTGCAGGGAAGTCGACTATCCTTCGTTGCTTGAACTATTTGGAACAACCTG
ATTCTGGTACTATTGCCATTGATGATTTCAAGGTGGATTTTGAAACAATTACCAAGGAGCAAATCCTTACTCTTCGTCGT
AAGTTGGCCATGGTGTTCCAACAGTTCAACCTCTTTGAACGTCGTACAGCCTTGGATAATGTTAAGGAAGGTCTCAAGAT
TGTTAAGAAACTTTCTGACGACGAAGCTACCAAGATTGCTAAAGAAGAGCTCGCTAAGGTTGGGCTTTCTAATCGTGAAA
ATTACTACCCACGTCACTTGTCGGGTGGTCAAAAGCAACGTGTGGCTTTGGCTCGTGCCCTTGCAATGAGGCCTGATGTG
CTCTTGCTTGACGAACCAACATCTGCCCTTGACCCTGAGTTGGTTGGTGAGGTTGAAAAATCAATCGTAGATGCGGCTAA
ATCAGGTCAAACAATGATTTTGGTCAGTCACGACATGAACTTTATTTATCAAGTGGCTGACAAGGTGCTTTTCCTTGAAA
AAGGTCATATCCTTGAACAAGGAACACCTGATGAAATCTTTAACCATCCAAAAGAAGAGCGAACAAAAGAATTCTTCGCT
TCTTATTCAAAACAATATCTTTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(17-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

33.962

100

0.364