Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   HPY07_RS11225 Genome accession   NZ_CP053806
Coordinates   2503363..2504427 (-) Length   354 a.a.
NCBI ID   WP_032472725.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP6G     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2498363..2509427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS11210 (HPY07_11220) - 2498626..2499813 (-) 1188 WP_001885701.1 aspartate kinase -
  HPY07_RS11215 (HPY07_11225) alaS 2500017..2502599 (-) 2583 WP_142992331.1 alanine--tRNA ligase -
  HPY07_RS11220 (HPY07_11230) recX 2502772..2503230 (-) 459 WP_175242128.1 recombination regulator RecX -
  HPY07_RS11225 (HPY07_11235) recA 2503363..2504427 (-) 1065 WP_032472725.1 recombinase RecA Machinery gene
  HPY07_RS11230 (HPY07_11240) pncC 2504561..2505067 (-) 507 WP_000853812.1 nicotinamide-nucleotide amidase -
  HPY07_RS11235 (HPY07_11245) - 2505234..2506364 (-) 1131 WP_002051153.1 sulfate/molybdate ABC transporter ATP-binding protein -
  HPY07_RS11240 (HPY07_11250) cysW 2506361..2507224 (-) 864 WP_000951362.1 sulfate ABC transporter permease subunit CysW -
  HPY07_RS11245 (HPY07_11255) cysT 2507235..2508086 (-) 852 WP_000531809.1 sulfate/thiosulfate ABC transporter permease CysT -
  HPY07_RS11250 (HPY07_11260) cysP 2508169..2509170 (-) 1002 WP_001079830.1 thiosulfate ABC transporter substrate-binding protein CysP -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38265.92 Da        Isoelectric Point: 5.0766

>NTDB_id=447615 HPY07_RS11225 WP_032472725.1 2503363..2504427(-) (recA) [Vibrio cholerae strain SP6G]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGEEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKHKMVEKSGAWYSYNGDKIGQGKANACKYLKENPEIAKTLDK
KLREMLLNPENMQLISETSSAADDVEFGAVPEEF

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=447615 HPY07_RS11225 WP_032472725.1 2503363..2504427(-) (recA) [Vibrio cholerae strain SP6G]
ATGGACGAGAATAAACAGAAGGCACTTGCGGCCGCCCTCGGTCAAATTGAAAAGCAATTTGGTAAAGGCTCCATCATGCG
CTTAGGCGACAACCGCGCGATGGATGTAGAAACCATTTCGACCGGTTCTCTGTCTCTGGATATCGCGTTGGGTGCTGGTG
GCCTACCAATGGGACGTATCGTTGAGATCTTCGGCCCTGAATCTTCGGGTAAAACGACACTGACTCTGGAACTGATTGCT
GCTGCGCAACGTGAAGGTAAAACCTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCGGTTTATGCCAAGAAACTGGG
CGTGAATATCGATGAGCTGCTGGTTTCTCAGCCTGATACCGGCGAGCAAGCGCTGGAAATTTGTGATGCACTGGCTCGCT
CTGGTGCGGTAGATGTAATTGTTGTTGACTCGGTCGCGGCTTTGACACCAAAAGCGGAAATCGAAGGCGAAATGGGCGAT
AGCCACATGGGTCTGCAAGCGCGTATGTTGTCGCAAGCAATGCGTAAACTGACGGGTAACCTCAAGCAATCCAACTGTAT
GTGTATCTTCATCAACCAAATTCGTATGAAGATTGGTGTGATGTTTGGTAACCCAGAAACCACCACTGGCGGTAACGCAC
TGAAATTCTACGCTTCTGTTCGTTTGGATATTCGCCGTACTGGCGCAATCAAAGAAGGCGAAGAAGTGGTGGGTAACGAA
ACCCGTATCAAGGTTGTGAAGAACAAGATTGCGGCACCGTTTAAAGAAGCCAACACTCAGATCATGTACGGCCAAGGTTT
CAACCGTGAAGGTGAATTGATCGATCTTGGTGTGAAACACAAGATGGTTGAAAAGTCAGGTGCTTGGTACAGCTATAACG
GCGATAAAATCGGCCAAGGTAAAGCGAATGCCTGCAAGTATCTGAAAGAAAACCCAGAAATTGCGAAAACTCTAGATAAA
AAACTGCGTGAAATGCTGTTAAACCCAGAAAACATGCAGCTGATATCTGAAACATCTTCTGCGGCGGATGACGTCGAATT
TGGCGCGGTGCCAGAAGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

99.718

100

0.997
  recA Vibrio cholerae O1 biovar El Tor strain E7946

99.718

100

0.997
  recA Pseudomonas stutzeri DSM 10701

75.841

92.373

0.701
  recA Acinetobacter baylyi ADP1

70.52

97.74

0.689
  recA Glaesserella parasuis strain SC1401

69.231

99.153

0.686
  recA Acinetobacter baumannii D1279779

73.7

92.373

0.681
  recA Neisseria gonorrhoeae MS11

66.949

100

0.669
  recA Neisseria gonorrhoeae MS11

66.949

100

0.669
  recA Neisseria gonorrhoeae strain FA1090

66.949

100

0.669
  recA Ralstonia pseudosolanacearum GMI1000

71.383

87.853

0.627
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.506

91.525

0.59
  recA Helicobacter pylori strain NCTC11637

61.062

95.763

0.585
  recA Helicobacter pylori 26695

60.767

95.763

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.863

90.678

0.579
  recA Streptococcus pneumoniae D39

62.848

91.243

0.573
  recA Streptococcus pneumoniae Rx1

62.848

91.243

0.573
  recA Streptococcus pneumoniae R6

62.848

91.243

0.573
  recA Streptococcus pneumoniae TIGR4

62.848

91.243

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.027

93.503

0.571
  recA Streptococcus mitis NCTC 12261

62.229

91.243

0.568
  recA Streptococcus mitis SK321

61.92

91.243

0.565
  recA Streptococcus mutans UA159

61.231

91.808

0.562
  recA Lactococcus lactis subsp. cremoris KW2

60.991

91.243

0.556
  recA Streptococcus pyogenes NZ131

60.615

91.808

0.556
  recA Latilactobacillus sakei subsp. sakei 23K

60.748

90.678

0.551
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.3

88.418

0.551