Detailed information    

insolico Bioinformatically predicted

Overview


Name   sepM   Type   Regulator
Locus tag   ST90728_RS07945 Genome accession   NZ_CP065479
Coordinates   1537223..1538299 (-) Length   358 a.a.
NCBI ID   WP_198553228.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 90728     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context


Location: 1532223..1543299
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS07925 (ST90728_07920) - 1533335..1535401 (-) 2067 WP_022096502.1 sodium:proton antiporter -
  ST90728_RS07930 (ST90728_07925) - 1535410..1535652 (-) 243 WP_022096501.1 hypothetical protein -
  ST90728_RS07935 (ST90728_07930) - 1535649..1536197 (-) 549 WP_004197152.1 class I SAM-dependent methyltransferase -
  ST90728_RS07940 (ST90728_07935) - 1536194..1537138 (-) 945 WP_096811628.1 TIGR01212 family radical SAM protein -
  ST90728_RS07945 (ST90728_07940) sepM 1537223..1538299 (-) 1077 WP_198553228.1 SepM family pheromone-processing serine protease Regulator
  ST90728_RS07950 (ST90728_07945) coaD 1538277..1538774 (-) 498 WP_011226465.1 pantetheine-phosphate adenylyltransferase -
  ST90728_RS07955 (ST90728_07950) rsmD 1538808..1539407 (-) 600 Protein_1514 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  ST90728_RS07960 (ST90728_07955) trxB 1539498..1540451 (-) 954 WP_255136104.1 thioredoxin-disulfide reductase -
  ST90728_RS07965 (ST90728_07960) - 1540484..1540708 (-) 225 WP_002951743.1 DUF4059 family protein -
  ST90728_RS07970 (ST90728_07965) amiE 1540923..1541666 (-) 744 WP_164178279.1 amino acid ABC transporter ATP-binding protein Regulator
  ST90728_RS07975 (ST90728_07970) - 1541666..1542412 (-) 747 WP_095559509.1 amino acid ABC transporter permease -

Sequence


Protein


Download         Length: 358 a.a.        Molecular weight: 39186.09 Da        Isoelectric Point: 9.4944

>NTDB_id=447614 ST90728_RS07945 WP_198553228.1 1537223..1538299(-) (sepM) [Streptococcus thermophilus strain 90728]
MANKTKSKALLEKMWRIKWWLLSIFTVLFLLFALFFPLNNYYVELPGGAFDTKEVLTVNKKADDSKGSYNFVAVAQTKAT
LALMLYAQFNDFAKLQTAEEATGNYSDEDFMRINQFYMETSQNQAVYQGLTLAGKEVSLEYMGVYVLQVADDSSFKGVLN
IADTVTAVNGKTFDNSTDMIKYVQGLKLGSKVKVTYMRDGKEKTATGKIIKIANGKNGIGIGLTDHTEIKSPENVKFKLD
GVGGPSAGLMFTLAIYDQVSGQDLKAGRKIAGTGTIEKDGAVGDIGGAYLKVKSAADSGADIFFVPNNLVTKEMKKADPD
AKTNYQEAKEAAEKLGTKMKIVPVKTAQEAIDYLKKTK

Nucleotide


Download         Length: 1077 bp        

>NTDB_id=447614 ST90728_RS07945 WP_198553228.1 1537223..1538299(-) (sepM) [Streptococcus thermophilus strain 90728]
GTGGCAAACAAGACAAAATCTAAAGCGCTATTAGAGAAAATGTGGCGTATTAAGTGGTGGTTATTAAGTATTTTTACGGT
ACTTTTCCTCCTTTTTGCCCTCTTTTTCCCGCTCAATAATTACTATGTGGAGCTTCCGGGTGGTGCTTTTGATACCAAGG
AAGTCTTGACAGTGAATAAGAAAGCTGATGATTCTAAGGGCTCCTATAATTTTGTGGCGGTGGCTCAAACCAAGGCGACT
TTGGCCTTGATGCTCTATGCTCAGTTTAATGATTTTGCAAAGCTTCAAACGGCTGAAGAGGCAACTGGAAATTACTCTGA
TGAAGATTTCATGCGCATCAACCAATTTTACATGGAGACTTCTCAAAACCAAGCGGTTTATCAGGGCTTGACTCTGGCTG
GTAAGGAGGTTAGTTTGGAGTATATGGGTGTCTATGTGCTTCAGGTTGCTGATGATTCTAGCTTCAAGGGTGTCCTCAAT
ATTGCTGATACGGTGACGGCTGTTAATGGTAAGACCTTTGATAATTCTACTGACATGATTAAATACGTTCAAGGACTTAA
GCTGGGTTCAAAGGTCAAGGTCACTTATATGAGAGATGGCAAAGAAAAGACTGCTACTGGTAAGATTATTAAGATTGCCA
ATGGCAAAAATGGTATTGGTATCGGCCTAACGGACCATACTGAGATCAAGAGTCCTGAGAATGTTAAGTTTAAACTGGAT
GGTGTCGGTGGGCCAAGTGCTGGTCTTATGTTTACCTTGGCTATTTACGATCAGGTGTCTGGTCAAGACCTCAAGGCTGG
CCGCAAGATTGCTGGTACAGGAACTATTGAAAAAGATGGGGCTGTCGGTGATATCGGTGGGGCCTATCTCAAGGTGAAAT
CTGCGGCTGATAGTGGCGCAGACATTTTCTTCGTGCCAAATAATCTAGTAACTAAGGAAATGAAAAAGGCTGATCCGGAT
GCCAAGACTAATTATCAAGAGGCCAAGGAAGCTGCCGAGAAACTGGGGACCAAGATGAAAATCGTCCCTGTTAAAACAGC
TCAAGAAGCCATTGATTATTTGAAAAAGACTAAATGA

Domains


Predicted by InterProScan.

(137-206)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

63.05

95.251

0.601