Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY07_RS08090 Genome accession   NZ_CP053806
Coordinates   1805397..1806821 (+) Length   474 a.a.
NCBI ID   WP_001959621.1    Uniprot ID   -
Organism   Vibrio cholerae strain SP6G     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1800397..1811821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY07_RS08070 (HPY07_08080) - 1800667..1801452 (-) 786 WP_000718973.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY07_RS08075 (HPY07_08085) cobT 1801452..1802477 (-) 1026 WP_162797043.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY07_RS08080 (HPY07_08090) msrB 1803088..1803534 (-) 447 WP_000935884.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY07_RS08085 (HPY07_08095) - 1803880..1805253 (+) 1374 WP_000117954.1 L-cystine transporter -
  HPY07_RS08090 (HPY07_08100) sbcB 1805397..1806821 (+) 1425 WP_001959621.1 exodeoxyribonuclease I Machinery gene
  HPY07_RS08095 (HPY07_08105) - 1806853..1807227 (+) 375 WP_175242049.1 CidA/LrgA family protein -
  HPY07_RS08100 (HPY07_08110) - 1807218..1807892 (+) 675 WP_000266245.1 LrgB family protein -
  HPY07_RS08105 (HPY07_08115) cdd 1808062..1808949 (+) 888 WP_001245905.1 cytidine deaminase -
  HPY07_RS08110 (HPY07_08120) - 1809108..1809983 (+) 876 WP_095466385.1 AEC family transporter -
  HPY07_RS08115 (HPY07_08125) purT 1810137..1811312 (+) 1176 WP_162797222.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54516.85 Da        Isoelectric Point: 5.9820

>NTDB_id=447606 HPY07_RS08090 WP_001959621.1 1805397..1806821(+) (sbcB) [Vibrio cholerae strain SP6G]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQTRLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEVREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447606 HPY07_RS08090 WP_001959621.1 1805397..1806821(+) (sbcB) [Vibrio cholerae strain SP6G]
ATGCAGCAAGAACACCAGCCCACCTTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTAGCAGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATTGAGTGGCCGGAAAATGATGACGGCTTTACT
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCTGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGAA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAACACGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGGTTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGTTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.734

100

0.987