Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxP   Type   Regulator
Locus tag   HPY06_RS16875 Genome accession   NZ_CP053805
Coordinates   742518..743612 (-) Length   364 a.a.
NCBI ID   WP_175231669.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL6Y     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context

Location: 737518..748612
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS16865 (HPY06_16935) - 739270..739935 (+) 666 WP_000268201.1 flagellar brake protein -
  HPY06_RS16870 (HPY06_16940) luxQ 739927..742500 (-) 2574 WP_001026310.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ Regulator
  HPY06_RS16875 (HPY06_16945) luxP 742518..743612 (-) 1095 WP_175231669.1 substrate-binding domain-containing protein Regulator
  HPY06_RS16880 (HPY06_16950) traF 743824..744984 (-) 1161 WP_057558274.1 conjugal transfer protein TraF -
  HPY06_RS16885 (HPY06_16955) - 745086..745391 (-) 306 WP_095489792.1 GIY-YIG nuclease family protein -
  HPY06_RS16890 (HPY06_16960) - 745391..746041 (-) 651 WP_001025632.1 YceH family protein -
  HPY06_RS16895 (HPY06_16965) - 746083..746280 (-) 198 WP_001246073.1 hypothetical protein -
  HPY06_RS16900 (HPY06_16970) - 746468..746788 (+) 321 WP_001089529.1 DUF496 family protein -
  HPY06_RS16905 (HPY06_16975) - 747195..747446 (+) 252 WP_001882582.1 YgjV family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 41298.97 Da        Isoelectric Point: 6.7050

>NTDB_id=447584 HPY06_RS16875 WP_175231669.1 742518..743612(-) (luxP) [Vibrio cholerae strain SL6Y]
MKRKLISPLFLMAALFSSTGQADSLKGYWHYDEFLAEFPEQRPISELFAQTVRDKPSALTVAQKQPVIISVVYPGQQISD
YWVRNIKAFEKRMDALGIRYQINQVFTRPNLDTRQQSVSLMEALKNKSDYLIFTLDTTRHRKFIEHVLHSSETKLILQNI
TTPVKDWQGKQPMMYIGFDHEYGAQLLAQYYQVHAPKKPYSVLYFSEGYISEARGDTFIQDMNEAHHFPLASSYYTKATE
QSGYEATLNIVKNNPEIGFIYACATDVALGAAQALKELNRQDILVNGWGGGSAELEALAKGELDVTVMRMNDDTGVAMAE
AIKWDLEGKAVPLVYSGDFEVVTKQDSAARIAERKARAFRYSDR

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=447584 HPY06_RS16875 WP_175231669.1 742518..743612(-) (luxP) [Vibrio cholerae strain SL6Y]
ATGAAAAGAAAGCTAATATCCCCGCTGTTTCTGATGGCAGCGCTCTTCAGCTCAACTGGTCAAGCCGATTCATTAAAAGG
CTATTGGCATTATGATGAATTTCTTGCTGAGTTCCCTGAACAGCGGCCAATTTCCGAGCTTTTTGCTCAAACAGTTCGTG
ATAAACCGAGTGCGTTGACGGTGGCGCAAAAACAACCCGTTATTATTTCAGTGGTCTATCCCGGACAGCAAATTTCCGAC
TATTGGGTTCGCAATATCAAAGCGTTTGAAAAGCGAATGGACGCTTTAGGGATTCGCTATCAAATCAATCAGGTGTTTAC
TCGCCCAAATCTTGATACTCGCCAGCAGAGTGTTTCCTTGATGGAAGCGCTGAAAAATAAGAGCGATTATCTGATTTTTA
CCTTAGATACCACCCGTCACCGCAAATTCATTGAGCATGTGCTGCACTCCTCCGAAACGAAACTGATTTTGCAAAACATC
ACGACGCCAGTCAAAGATTGGCAAGGCAAGCAGCCCATGATGTACATCGGTTTTGATCATGAGTACGGCGCGCAATTATT
GGCGCAATATTACCAAGTACATGCCCCGAAAAAGCCGTACTCAGTACTTTATTTTTCCGAGGGGTATATCAGTGAAGCGC
GGGGAGACACCTTCATTCAAGATATGAACGAGGCGCACCATTTTCCGTTGGCTTCTTCCTATTACACCAAGGCAACCGAG
CAAAGTGGCTATGAAGCGACCCTAAACATCGTCAAGAATAATCCAGAAATTGGTTTTATTTACGCCTGTGCGACAGACGT
GGCTTTGGGAGCTGCGCAGGCACTGAAAGAGCTGAATCGACAAGATATTCTCGTCAATGGTTGGGGAGGCGGCTCGGCTG
AGCTTGAAGCGCTTGCCAAAGGAGAATTGGATGTCACTGTGATGCGTATGAATGACGATACGGGTGTGGCGATGGCCGAA
GCGATTAAATGGGATTTGGAAGGGAAAGCCGTACCTTTGGTCTATTCAGGCGATTTTGAAGTGGTCACCAAACAAGATTC
AGCAGCGCGTATTGCAGAACGGAAAGCTCGGGCTTTCCGTTATTCGGATCGTTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein domain (Peripla_BP_4)

(69-323)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

98.077

100

0.981