Detailed information NTG0447569

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY06_RS11090
• Genome accession: NZ_CP053804
• Coordinates: 2470898..2471905 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain SL6Y
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2465898..2476905

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY06_RS11080 (HPY06_11085)	cysM	2467062..2467949 (+)	888	WP_001279364.1	cysteine synthase CysM	-
HPY06_RS11085 (HPY06_11090)	mutS	2468216..2470804 (+)	2589	WP_175230791.1	DNA mismatch repair protein MutS	-
HPY06_RS11090 (HPY06_11095)	rpoS	2470898..2471905 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
HPY06_RS11095 (HPY06_11100)	nlpD	2471979..2472914 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
HPY06_RS11100 (HPY06_11105)	-	2472914..2473540 (-)	627	WP_044126958.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY06_RS11105 (HPY06_11110)	surE	2473533..2474285 (-)	753	WP_044126957.1	5'/3'-nucleotidase SurE	-
HPY06_RS11110 (HPY06_11115)	truD	2474287..2475372 (-)	1086	WP_044126956.1	tRNA pseudouridine(13) synthase TruD	-
HPY06_RS11115 (HPY06_11120)	ispF	2475402..2475878 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY06_RS11120 (HPY06_11125)	ispD	2475875..2476573 (-)	699	WP_134986894.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY06_RS11125 (HPY06_11130)	ftsB	2476570..2476854 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=447569 HPY06_RS11090 WP_000116735.1 2470898..2471905(-) (rpoS) [Vibrio cholerae strain SL6Y]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447569 HPY06_RS11090 WP_000116735.1 2470898..2471905(-) (rpoS) [Vibrio cholerae strain SL6Y]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCCACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTTTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTGCGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997