Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPY06_RS10950 Genome accession   NZ_CP053804
Coordinates   2444288..2444806 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL6Y     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2439288..2449806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS10925 (HPY06_10930) rimM 2439397..2439951 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  HPY06_RS10930 (HPY06_10935) rpsP 2439979..2440227 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  HPY06_RS10935 (HPY06_10940) ffh 2440463..2441848 (-) 1386 WP_000462715.1 signal recognition particle protein -
  HPY06_RS10940 (HPY06_10945) - 2442061..2442855 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  HPY06_RS10945 (HPY06_10950) - 2442938..2444218 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  HPY06_RS10950 (HPY06_10955) luxS 2444288..2444806 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  HPY06_RS10955 (HPY06_10960) gshA 2444984..2446555 (-) 1572 WP_175230778.1 glutamate--cysteine ligase -
  HPY06_RS10960 (HPY06_10965) - 2446667..2449522 (-) 2856 WP_162811052.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=447566 HPY06_RS10950 WP_001130227.1 2444288..2444806(-) (luxS) [Vibrio cholerae strain SL6Y]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447566 HPY06_RS10950 WP_001130227.1 2444288..2444806(-) (luxS) [Vibrio cholerae strain SL6Y]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACTCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1