Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY06_RS07915 Genome accession   NZ_CP053804
Coordinates   1764958..1766382 (+) Length   474 a.a.
NCBI ID   WP_175230518.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL6Y     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1759958..1771382
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY06_RS07895 (HPY06_07900) - 1760228..1761013 (-) 786 WP_175230514.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY06_RS07900 (HPY06_07905) cobT 1761013..1762038 (-) 1026 WP_060779502.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY06_RS07905 (HPY06_07910) msrB 1762649..1763095 (-) 447 WP_000935885.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY06_RS07910 (HPY06_07915) - 1763441..1764814 (+) 1374 WP_175230515.1 L-cystine transporter -
  HPY06_RS07915 (HPY06_07920) sbcB 1764958..1766382 (+) 1425 WP_175230518.1 exodeoxyribonuclease I Machinery gene
  HPY06_RS07920 (HPY06_07925) - 1766414..1766788 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HPY06_RS07925 (HPY06_07930) - 1766779..1767453 (+) 675 WP_000266239.1 LrgB family protein -
  HPY06_RS07930 (HPY06_07935) cdd 1767623..1768510 (+) 888 WP_113628324.1 cytidine deaminase -
  HPY06_RS07935 (HPY06_07940) - 1768669..1769544 (+) 876 WP_000462871.1 AEC family transporter -
  HPY06_RS07940 (HPY06_07945) purT 1769698..1770873 (+) 1176 WP_175230520.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54482.93 Da        Isoelectric Point: 6.2567

>NTDB_id=447558 HPY06_RS07915 WP_175230518.1 1764958..1766382(+) (sbcB) [Vibrio cholerae strain SL6Y]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIFCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGINREQCLAHLNVIRQHPEIREKLVTVFSQERKFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447558 HPY06_RS07915 WP_175230518.1 1764958..1766382(+) (sbcB) [Vibrio cholerae strain SL6Y]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGGGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTTCTGTCAGCTGCCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCAAACACCACTAGCCTTGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAAATTGGTATTAACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCAGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCAAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.523

100

0.985