Detailed information NTG0447541

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: HPY06_RS01120
• Genome accession: NZ_CP053804
• Coordinates: 241615..242622 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain SL6Y
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 236615..247622

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY06_RS01100 (HPY06_01100)	metJ	236620..236937 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
HPY06_RS01105 (HPY06_01105)	-	237048..238325 (-)	1278	WP_053034337.1	malic enzyme-like NAD(P)-binding protein	-
HPY06_RS01110 (HPY06_01110)	rpmE	238632..238850 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
HPY06_RS01115 (HPY06_01115)	priA	239105..241309 (+)	2205	WP_001960145.1	primosomal protein N'	-
HPY06_RS01120 (HPY06_01120)	cytR	241615..242622 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
HPY06_RS01125 (HPY06_01125)	-	242794..243345 (+)	552	WP_001886088.1	SPOR domain-containing protein	-
HPY06_RS01130 (HPY06_01130)	hslV	243482..244039 (+)	558	WP_000208247.1	ATP-dependent protease subunit HslV	-
HPY06_RS01135 (HPY06_01135)	hslU	244105..245436 (+)	1332	WP_057642155.1	HslU--HslV peptidase ATPase subunit	-
HPY06_RS01140 (HPY06_01140)	-	245540..246457 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
HPY06_RS01145 (HPY06_01145)	rraA	246532..247047 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=447541 HPY06_RS01120 WP_000224452.1 241615..242622(+) (cytR) [Vibrio cholerae strain SL6Y]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=447541 HPY06_RS01120 WP_000224452.1 241615..242622(+) (cytR) [Vibrio cholerae strain SL6Y]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTATTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTTCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGTATCACCATGAACCCGACTTACT
GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCATAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGTGTACCGCAAGATCT
CTCCGTGGTCGGTTTTGATGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTACGTGCTGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904