Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ST90728_RS00360 Genome accession   NZ_CP065479
Coordinates   63013..63603 (+) Length   196 a.a.
NCBI ID   WP_011680603.1    Uniprot ID   Q03MX8
Organism   Streptococcus thermophilus strain 90728     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 58013..68603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST90728_RS00335 (ST90728_00330) - 59144..59599 (-) 456 WP_173940304.1 DUF3021 domain-containing protein -
  ST90728_RS00340 (ST90728_00335) - 59596..59987 (-) 392 Protein_46 LytTR family DNA-binding domain-containing protein -
  ST90728_RS00345 (ST90728_00340) - 60211..60516 (+) 306 WP_002949050.1 hypothetical protein -
  ST90728_RS00350 (ST90728_00345) hexB 60568..62511 (+) 1944 WP_179966861.1 DNA mismatch repair endonuclease MutL Machinery gene
  ST90728_RS00355 (ST90728_00350) - 62640..62861 (+) 222 WP_011680602.1 hypothetical protein -
  ST90728_RS00360 (ST90728_00355) ruvA 63013..63603 (+) 591 WP_011680603.1 Holliday junction branch migration protein RuvA Machinery gene
  ST90728_RS00365 (ST90728_00360) - 63610..64164 (+) 555 WP_347114193.1 DNA-3-methyladenine glycosylase I -
  ST90728_RS00370 (ST90728_00365) cinA 64260..65531 (+) 1272 WP_022096618.1 competence/damage-inducible protein A Machinery gene
  ST90728_RS00375 (ST90728_00370) recA 65567..66706 (+) 1140 WP_164177842.1 recombinase RecA Machinery gene
  ST90728_RS00380 (ST90728_00375) spx 66883..67281 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21683.98 Da        Isoelectric Point: 5.2834

>NTDB_id=447541 ST90728_RS00360 WP_011680603.1 63013..63603(+) (ruvA) [Streptococcus thermophilus strain 90728]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKATELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=447541 ST90728_RS00360 WP_011680603.1 63013..63603(+) (ruvA) [Streptococcus thermophilus strain 90728]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGGAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAAGCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(151-195)

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03MX8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

66.5

100

0.679
  ruvA Streptococcus pneumoniae R6

66.5

100

0.679
  ruvA Streptococcus pneumoniae D39

66.5

100

0.679
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.647

100

0.444