Detailed information NTG0447534

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: ST4134_RS09580
• Genome accession: NZ_CP065478
• Coordinates: 1841603..1842703 (+)
• Length: 366 a.a.
• NCBI ID: WP_024704278.1
• Uniprot ID: -
• Organism: Streptococcus thermophilus strain 4134
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1836603..1847703

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ST4134_RS09555 (ST4134_09570)	pgsA	1837145..1837687 (-)	543	WP_024704275.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
ST4134_RS09560 (ST4134_09575)	-	1837700..1838557 (-)	858	WP_011681760.1	helix-turn-helix transcriptional regulator	-
ST4134_RS09565 (ST4134_09580)	yfmH	1838616..1839893 (-)	1278	WP_024704276.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
ST4134_RS09570 (ST4134_09585)	yfmF	1839895..1841145 (-)	1251	WP_024704277.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
ST4134_RS09575 (ST4134_09590)	yaaA	1841224..1841600 (+)	377	Protein_1828	S4 domain-containing protein YaaA	-
ST4134_RS09580 (ST4134_09595)	recF	1841603..1842703 (+)	1101	WP_024704278.1	DNA replication/repair protein RecF	Machinery gene
ST4134_RS09585 (ST4134_09600)	guaB	1842872..1844353 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
ST4134_RS09590 (ST4134_09605)	trpS	1844530..1845552 (-)	1023	WP_011681763.1	tryptophan--tRNA ligase	-
ST4134_RS09595 (ST4134_09610)	-	1845980..1846852 (+)	873	WP_011681764.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42172.35 Da
• Isoelectric Point: 9.2442

>NTDB_id=447534 ST4134_RS09580 WP_024704278.1 1841603..1842703(+) (recF) [Streptococcus thermophilus strain 4134]
MWLKKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=447534 ST4134_RS09580 WP_024704278.1 1841603..1842703(+) (recF) [Streptococcus thermophilus strain 4134]
ATGTGGCTTAAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432