Detailed information NTG0447523

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY16_RS10725
• Genome accession: NZ_CP053802
• Coordinates: 2410519..2411526 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116739.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain L6G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2405519..2416526

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY16_RS10715 (HPY16_10710)	cysM	2406682..2407569 (+)	888	WP_175248256.1	cysteine synthase CysM	-
HPY16_RS10720 (HPY16_10715)	mutS	2407837..2410425 (+)	2589	WP_175248257.1	DNA mismatch repair protein MutS	-
HPY16_RS10725 (HPY16_10720)	rpoS	2410519..2411526 (-)	1008	WP_000116739.1	RNA polymerase sigma factor RpoS	Regulator
HPY16_RS10730 (HPY16_10725)	nlpD	2411600..2412535 (-)	936	WP_095461793.1	murein hydrolase activator NlpD	-
HPY16_RS10735 (HPY16_10730)	-	2412535..2413161 (-)	627	WP_057550676.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY16_RS10740 (HPY16_10735)	surE	2413154..2413906 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
HPY16_RS10745 (HPY16_10740)	truD	2413908..2414993 (-)	1086	WP_044126956.1	tRNA pseudouridine(13) synthase TruD	-
HPY16_RS10750 (HPY16_10745)	ispF	2415023..2415499 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY16_RS10755 (HPY16_10750)	ispD	2415496..2416194 (-)	699	WP_042988183.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY16_RS10760 (HPY16_10755)	ftsB	2416191..2416475 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=447523 HPY16_RS10725 WP_000116739.1 2410519..2411526(-) (rpoS) [Vibrio cholerae strain L6G]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447523 HPY16_RS10725 WP_000116739.1 2410519..2411526(-) (rpoS) [Vibrio cholerae strain L6G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTCGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994