Detailed information    

insolico Bioinformatically predicted

Overview

Name   tfoX   Type   Regulator
Locus tag   HPY16_RS07895 Genome accession   NZ_CP053802
Coordinates   1777594..1778181 (-) Length   195 a.a.
NCBI ID   WP_001005366.1    Uniprot ID   A0A0K9UTP3
Organism   Vibrio cholerae strain L6G     
Function   master regulator of natural competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772594..1783181
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS07875 (HPY16_07870) - 1772822..1774087 (-) 1266 WP_114742106.1 YdgA family protein -
  HPY16_RS07880 (HPY16_07875) - 1774310..1776265 (+) 1956 WP_175248170.1 ATP-binding protein -
  HPY16_RS07885 (HPY16_07880) - 1776262..1776759 (+) 498 WP_175248171.1 response regulator -
  HPY16_RS07890 (HPY16_07885) - 1776950..1777498 (+) 549 WP_001232641.1 hypothetical protein -
  HPY16_RS07895 (HPY16_07890) tfoX 1777594..1778181 (-) 588 WP_001005366.1 TfoX/Sxy family DNA transformation protein Regulator
  HPY16_RS07900 (HPY16_07895) - 1778559..1779479 (+) 921 WP_000019000.1 HDOD domain-containing protein -
  HPY16_RS07905 (HPY16_07900) - 1779500..1780405 (+) 906 WP_175248172.1 lysine exporter LysO family protein -
  HPY16_RS07910 (HPY16_07905) - 1780594..1781103 (+) 510 WP_000826868.1 hypothetical protein -
  HPY16_RS07915 (HPY16_07910) panP 1781213..1782859 (+) 1647 WP_057554318.1 pyridoxal-dependent aspartate 1-decarboxylase PanP -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22816.03 Da        Isoelectric Point: 6.9718

>NTDB_id=447514 HPY16_RS07895 WP_001005366.1 1777594..1778181(-) (tfoX) [Vibrio cholerae strain L6G]
MNEQQFFDYVTKFGAYQKRSMFGGIGLFQHDAMYVLVSEDRIFVRGGEELDPELLALGCEKYRHVKKQTTATVNYYDITE
LYEQHHPELDSIIERSIQFSVNQREFQRSAASRRLRDLPNMQLTLERMVKKAGIDDVETFMSLGAPEVFNKVRQAYGSDV
DVKLLWKFAGAIEGIHWKLLQEPRKRQLLESCQQR

Nucleotide


Download         Length: 588 bp        

>NTDB_id=447514 HPY16_RS07895 WP_001005366.1 1777594..1778181(-) (tfoX) [Vibrio cholerae strain L6G]
ATGAATGAGCAACAGTTTTTCGACTACGTAACTAAGTTTGGCGCCTACCAAAAACGCTCGATGTTTGGTGGTATTGGCTT
GTTTCAACACGACGCTATGTATGTGTTGGTCAGTGAAGACCGCATTTTTGTGCGTGGTGGAGAAGAGCTTGACCCTGAGC
TCTTGGCCTTAGGGTGCGAGAAATATCGCCATGTTAAAAAACAGACAACGGCAACCGTAAACTATTACGACATCACTGAA
CTGTATGAGCAACATCACCCTGAGCTAGACTCGATCATTGAACGCTCGATTCAGTTTTCTGTGAATCAGCGGGAATTTCA
ACGCTCAGCAGCCAGTCGTCGTCTACGGGATTTACCCAATATGCAACTGACTTTGGAGCGTATGGTAAAAAAAGCGGGCA
TTGACGATGTGGAAACTTTTATGAGCCTCGGTGCGCCAGAAGTGTTTAATAAGGTGCGTCAAGCTTATGGAAGTGATGTC
GATGTAAAACTACTGTGGAAGTTTGCGGGTGCGATTGAAGGCATTCACTGGAAACTGCTGCAAGAGCCGCGTAAGCGCCA
ACTGTTAGAAAGTTGTCAGCAGCGTTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(112-190)

TfoX N-terminal domain (TfoX_N)

(9-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0K9UTP3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.