Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY16_RS07515 Genome accession   NZ_CP053802
Coordinates   1694418..1695842 (+) Length   474 a.a.
NCBI ID   WP_134987024.1    Uniprot ID   -
Organism   Vibrio cholerae strain L6G     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1689418..1700842
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY16_RS07495 (HPY16_07490) - 1689748..1690473 (-) 726 WP_367889858.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY16_RS07500 (HPY16_07495) cobT 1690473..1691498 (-) 1026 WP_175248149.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY16_RS07505 (HPY16_07500) msrB 1692109..1692555 (-) 447 WP_113628322.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY16_RS07510 (HPY16_07505) - 1692901..1694274 (+) 1374 WP_000117954.1 L-cystine transporter -
  HPY16_RS07515 (HPY16_07510) sbcB 1694418..1695842 (+) 1425 WP_134987024.1 exodeoxyribonuclease I Machinery gene
  HPY16_RS07520 (HPY16_07515) - 1695874..1696248 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HPY16_RS07525 (HPY16_07520) - 1696239..1696913 (+) 675 WP_000266239.1 LrgB family protein -
  HPY16_RS07530 (HPY16_07525) cdd 1697083..1697970 (+) 888 WP_175248150.1 cytidine deaminase -
  HPY16_RS07535 (HPY16_07530) - 1698129..1699004 (+) 876 WP_000462868.1 AEC family transporter -
  HPY16_RS07540 (HPY16_07535) purT 1699158..1700333 (+) 1176 WP_175248151.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54541.95 Da        Isoelectric Point: 6.0786

>NTDB_id=447512 HPY16_RS07515 WP_134987024.1 1694418..1695842(+) (sbcB) [Vibrio cholerae strain L6G]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFITRIHAELSTPNTISLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGINREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447512 HPY16_RS07515 WP_134987024.1 1694418..1695842(+) (sbcB) [Vibrio cholerae strain L6G]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTCTTTGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATTGGCGAGCCTTTGGTAATTTACTGTCAGCTACCCAACG
ACTATTTACCTGCTCCTGAAGCCGCATTGATCACAGGGATCACTCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCC
GAATTTATCACGCGTATTCATGCTGAGCTCTCCACACCCAATACTATCAGCCTAGGCTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCTCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCCGAAAATGCACAA
AAAATTGGTATTAACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCAGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAATTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCCGATAAG
CGCATTGAACCGCTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989