NTDB

Overview

Name	cytR	Type	Regulator
Locus tag	HPY16_RS01110	Genome accession	NZ_CP053802
Coordinates	239117..240124 (+)	Length	335 a.a.
NCBI ID	WP_000224452.1	Uniprot ID	A0A085RG68
Organism	Vibrio cholerae strain L6G
Function	promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 234117..245124

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY16_RS01090 (HPY16_01090)	metJ	234121..234438 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
HPY16_RS01095 (HPY16_01095)	-	234549..235826 (-)	1278	WP_001278588.1	malic enzyme-like NAD(P)-binding protein	-
HPY16_RS01100 (HPY16_01100)	rpmE	236134..236352 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
HPY16_RS01105 (HPY16_01105)	priA	236607..238811 (+)	2205	WP_175247923.1	primosomal protein N'	-
HPY16_RS01110 (HPY16_01110)	cytR	239117..240124 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
HPY16_RS01115 (HPY16_01115)	-	240296..240847 (+)	552	WP_175247924.1	SPOR domain-containing protein	-
HPY16_RS01120 (HPY16_01120)	hslV	240984..241541 (+)	558	WP_000208247.1	ATP-dependent protease subunit HslV	-
HPY16_RS01125 (HPY16_01125)	hslU	241607..242938 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
HPY16_RS01130 (HPY16_01130)	-	243042..243959 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
HPY16_RS01135 (HPY16_01135)	rraA	244034..244549 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

Download Length: 335 a.a. Molecular weight: 37018.59 Da Isoelectric Point: 7.0759

                                >NTDB_id=447495 HPY16_RS01110 WP_000224452.1 239117..240124(+) (cytR) [Vibrio cholerae strain L6G]

MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG

IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN

LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA

IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE

TKLVVRESAAPPSKK

Nucleotide

Download Length: 1008 bp

                                >NTDB_id=447495 HPY16_RS01110 WP_000224452.1 239117..240124(+) (cytR) [Vibrio cholerae strain L6G]

ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACTGTGTCTCGTGCGTTGATGAATCCAGAGAA

AGTCTCGTCGTCCACTCGTAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT

TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT

ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT

CGTTAATCTGGTGTTTACCAAACAGGCAGACGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG

AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC

CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCAGGTCCACAACA

TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT

GCACTTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG

ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT

CTCTGTGGTCGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACCATTTCGCAGCCGCGTTATG

AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTGCGTGCTGGATCGCGTCTTTTGGAG

ACCAAGTTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(168-328)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A085RG68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904

Detailed information NTG0447495