Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HPY15_RS15770 Genome accession   NZ_CP053801
Coordinates   452519..453688 (-) Length   389 a.a.
NCBI ID   WP_001039916.1    Uniprot ID   -
Organism   Vibrio cholerae strain SO5Y     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 447519..458688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS15765 (HPY15_15840) cqsS 450230..452290 (+) 2061 WP_001892744.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  HPY15_RS15770 (HPY15_15845) cqsA 452519..453688 (-) 1170 WP_001039916.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HPY15_RS15775 (HPY15_15850) - 453885..454847 (-) 963 WP_001104014.1 TDT family transporter -
  HPY15_RS15780 (HPY15_15855) clcA 454994..456400 (-) 1407 WP_175235997.1 H(+)/Cl(-) exchange transporter ClcA -
  HPY15_RS15785 (HPY15_15860) - 456867..457856 (+) 990 WP_053034636.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43510.54 Da        Isoelectric Point: 6.1249

>NTDB_id=447488 HPY15_RS15770 WP_001039916.1 452519..453688(-) (cqsA) [Vibrio cholerae strain SO5Y]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQANPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVNCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=447488 HPY15_RS15770 WP_001039916.1 452519..453688(-) (cqsA) [Vibrio cholerae strain SO5Y]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTCTGGCTAAGTTCACAGGCTTTGATGAATGTCTATTATCTCAATC
TGGTTGGAATGCAAACGTCGGTTTATTACAAACCATCTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCACGCTACGCCAATGCTCAGGCGAATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGTCCTGGGATCATTGTCGTAGACTCGATTTACAGCACTTTAGGTACGATTGCACCGCTAGCGGA
ACTGGTCAATATCAGTAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGCACACATGGCCCTAATG
GTGCAGGTTTATTGGCAGAATTAGGTCTCACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGTAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCGGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACGACTTTAGAGATTATTGAATCTGCGGATAATCGTCGTCAGCATTTAG
ATCGTATGGCGAGAAAATTACGCATAGGATTATCCCAGCTGGGATTAACCATTCGCAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCAAAGAATAAAAACATTATTCGCTTATCACTCAATAGTGATGTGAACGATGAGCAAATCGCCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGCGGTGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

99.486

100

0.995