Detailed information NTG0447476

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY15_RS11275
• Genome accession: NZ_CP053800
• Coordinates: 2504861..2505868 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116739.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SO5Y
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2499861..2510868

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY15_RS11265 (HPY15_11275)	cysM	2501024..2501911 (+)	888	WP_001279365.1	cysteine synthase CysM	-
HPY15_RS11270 (HPY15_11280)	mutS	2502179..2504767 (+)	2589	WP_025984303.1	DNA mismatch repair protein MutS	-
HPY15_RS11275 (HPY15_11285)	rpoS	2504861..2505868 (-)	1008	WP_000116739.1	RNA polymerase sigma factor RpoS	Regulator
HPY15_RS11280 (HPY15_11290)	nlpD	2505942..2506877 (-)	936	WP_000177561.1	murein hydrolase activator NlpD	-
HPY15_RS11285 (HPY15_11295)	-	2506877..2507503 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY15_RS11290 (HPY15_11300)	surE	2507496..2508248 (-)	753	WP_175235832.1	5'/3'-nucleotidase SurE	-
HPY15_RS11295 (HPY15_11305)	truD	2508250..2509335 (-)	1086	WP_044126956.1	tRNA pseudouridine(13) synthase TruD	-
HPY15_RS11300 (HPY15_11310)	ispF	2509365..2509841 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY15_RS11305 (HPY15_11315)	ispD	2509838..2510536 (-)	699	WP_148516290.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY15_RS11310 (HPY15_11320)	ftsB	2510533..2510817 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=447476 HPY15_RS11275 WP_000116739.1 2504861..2505868(-) (rpoS) [Vibrio cholerae strain SO5Y]
MSVSNTVTKVEEFDFEDEALEVLETDTELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447476 HPY15_RS11275 WP_000116739.1 2504861..2505868(-) (rpoS) [Vibrio cholerae strain SO5Y]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.403	100	0.994