Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPY15_RS11135 Genome accession   NZ_CP053800
Coordinates   2478375..2478893 (-) Length   172 a.a.
NCBI ID   WP_001130227.1    Uniprot ID   -
Organism   Vibrio cholerae strain SO5Y     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2473375..2483893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS11110 (HPY15_11120) rimM 2473484..2474038 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  HPY15_RS11115 (HPY15_11125) rpsP 2474066..2474314 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  HPY15_RS11120 (HPY15_11130) ffh 2474550..2475935 (-) 1386 WP_002043108.1 signal recognition particle protein -
  HPY15_RS11125 (HPY15_11135) - 2476148..2476942 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  HPY15_RS11130 (HPY15_11140) - 2477025..2478305 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  HPY15_RS11135 (HPY15_11145) luxS 2478375..2478893 (-) 519 WP_001130227.1 S-ribosylhomocysteine lyase Regulator
  HPY15_RS11140 (HPY15_11150) gshA 2478942..2480516 (-) 1575 WP_046127123.1 glutamate--cysteine ligase -
  HPY15_RS11145 (HPY15_11155) - 2480628..2483483 (-) 2856 WP_175235826.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19080.90 Da        Isoelectric Point: 5.2199

>NTDB_id=447473 HPY15_RS11135 WP_001130227.1 2478375..2478893(-) (luxS) [Vibrio cholerae strain SO5Y]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKAIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447473 HPY15_RS11135 WP_001130227.1 2478375..2478893(-) (luxS) [Vibrio cholerae strain SO5Y]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATCTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGCAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCTCTCGAAGAAGCCAAAGCGATTGCGAAAAACGTGATTGCGGCAGGCATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

100

100

1