Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY15_RS08000 Genome accession   NZ_CP053800
Coordinates   1778130..1779554 (+) Length   474 a.a.
NCBI ID   WP_046126654.1    Uniprot ID   -
Organism   Vibrio cholerae strain SO5Y     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1773130..1784554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY15_RS07980 (HPY15_07990) - 1773526..1774311 (-) 786 WP_046126658.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY15_RS07985 (HPY15_07995) cobT 1774311..1775336 (-) 1026 WP_046126657.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY15_RS07990 (HPY15_08000) msrB 1775821..1776267 (-) 447 WP_046126656.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY15_RS07995 (HPY15_08005) - 1776613..1777986 (+) 1374 WP_046126655.1 L-cystine transporter -
  HPY15_RS08000 (HPY15_08010) sbcB 1778130..1779554 (+) 1425 WP_046126654.1 exodeoxyribonuclease I Machinery gene
  HPY15_RS08005 (HPY15_08015) - 1779586..1779960 (+) 375 WP_046127346.1 CidA/LrgA family protein -
  HPY15_RS08010 (HPY15_08020) - 1779951..1780625 (+) 675 WP_046126653.1 LrgB family protein -
  HPY15_RS08015 (HPY15_08025) cdd 1780795..1781682 (+) 888 WP_046126652.1 cytidine deaminase -
  HPY15_RS08020 (HPY15_08030) - 1781841..1782716 (+) 876 WP_000462870.1 AEC family transporter -
  HPY15_RS08025 (HPY15_08035) purT 1782870..1784045 (+) 1176 WP_000468079.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54530.94 Da        Isoelectric Point: 5.9820

>NTDB_id=447465 HPY15_RS08000 WP_046126654.1 1778130..1779554(+) (sbcB) [Vibrio cholerae strain SO5Y]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYMRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447465 HPY15_RS08000 WP_046126654.1 1778130..1779554(+) (sbcB) [Vibrio cholerae strain SO5Y]
ATGCAGCAAGAACACCAGCCCACATTCTTTTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTGCCCGCTCCTGAAGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATATGCGGTATGAAGACCTAGCACCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTCCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

98.945

100

0.989