Detailed information NTG0447430

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY14_RS11215
• Genome accession: NZ_CP053798
• Coordinates: 2495755..2496762 (-)
• Length: 335 a.a.
• NCBI ID: WP_175233931.1
• Uniprot ID: -
• Organism: Vibrio cholerae strain SL5Y
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2490755..2501762

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY14_RS11205 (HPY14_11205)	cysM	2491918..2492805 (+)	888	WP_001914090.1	cysteine synthase CysM	-
HPY14_RS11210 (HPY14_11210)	mutS	2493073..2495661 (+)	2589	WP_175233930.1	DNA mismatch repair protein MutS	-
HPY14_RS11215 (HPY14_11215)	rpoS	2495755..2496762 (-)	1008	WP_175233931.1	RNA polymerase sigma factor RpoS	Regulator
HPY14_RS11220 (HPY14_11220)	nlpD	2496836..2497771 (-)	936	WP_000177561.1	murein hydrolase activator NlpD	-
HPY14_RS11225 (HPY14_11225)	-	2497771..2498397 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY14_RS11230 (HPY14_11230)	surE	2498390..2499142 (-)	753	WP_162923881.1	5'/3'-nucleotidase SurE	-
HPY14_RS11235 (HPY14_11235)	truD	2499144..2500229 (-)	1086	WP_175233932.1	tRNA pseudouridine(13) synthase TruD	-
HPY14_RS11240 (HPY14_11240)	ispF	2500259..2500735 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY14_RS11245 (HPY14_11245)	ispD	2500732..2501430 (-)	699	WP_001061967.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY14_RS11250 (HPY14_11250)	ftsB	2501427..2501711 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38520.37 Da
• Isoelectric Point: 4.3620

>NTDB_id=447430 HPY14_RS11215 WP_175233931.1 2495755..2496762(-) (rpoS) [Vibrio cholerae strain SL5Y]
MSVSNTVTKVEEFDFEDEALEVLDTDTELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447430 HPY14_RS11215 WP_175233931.1 2495755..2496762(-) (rpoS) [Vibrio cholerae strain SL5Y]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGATACTGATAC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAATTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTGCGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCTCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.104	100	0.991