Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY14_RS08000 Genome accession   NZ_CP053798
Coordinates   1780975..1782399 (+) Length   474 a.a.
NCBI ID   WP_095466939.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL5Y     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1775975..1787399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY14_RS07980 (HPY14_07985) - 1776369..1777154 (-) 786 WP_002051972.1 adenosylcobinamide-GDP ribazoletransferase -
  HPY14_RS07985 (HPY14_07990) cobT 1777154..1778179 (-) 1026 WP_175233897.1 nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase -
  HPY14_RS07990 (HPY14_07995) msrB 1778664..1779110 (-) 447 WP_000935886.1 peptide-methionine (R)-S-oxide reductase MsrB -
  HPY14_RS07995 (HPY14_08000) - 1779457..1780830 (+) 1374 WP_162796582.1 L-cystine transporter -
  HPY14_RS08000 (HPY14_08005) sbcB 1780975..1782399 (+) 1425 WP_095466939.1 exodeoxyribonuclease I Machinery gene
  HPY14_RS08005 (HPY14_08010) - 1782431..1782805 (+) 375 WP_001881007.1 CidA/LrgA family protein -
  HPY14_RS08010 (HPY14_08015) - 1782796..1783470 (+) 675 WP_000266239.1 LrgB family protein -
  HPY14_RS08015 (HPY14_08020) cdd 1783640..1784527 (+) 888 WP_001245905.1 cytidine deaminase -
  HPY14_RS08020 (HPY14_08025) - 1784686..1785561 (+) 876 WP_001888283.1 AEC family transporter -
  HPY14_RS08025 (HPY14_08030) purT 1785715..1786890 (+) 1176 WP_000468079.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54539.93 Da        Isoelectric Point: 5.9820

>NTDB_id=447419 HPY14_RS08000 WP_095466939.1 1780975..1782399(+) (sbcB) [Vibrio cholerae strain SL5Y]
MQQEHQPTFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTINLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYTRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447419 HPY14_RS08000 WP_095466939.1 1780975..1782399(+) (sbcB) [Vibrio cholerae strain SL5Y]
ATGCAGCAAGAACACCAGCCCACATTCTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGCGAGCCTTTGGTAATTTACTGTCAGCTGCCCAACG
ACTATTTGCCCGCCCCTGAGGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTCGCGGAGCCC
GAATTTATCGCGCGTATTCATGCTGAGCTCTCCACACCCAATACCATCAACCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTCACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AACTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATACGCGGTATGAAGACCTAGCGCCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAACAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACACCCCGAGATTCGTGAAAAACTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGTCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTGCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterproScan.

Exonuclease (RNase_T)

(11-191)

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

99.578

100

0.996