Detailed information NTG0447402

Bioinformatically predicted

Overview

• Name: cytR
• Type: Regulator
• Locus tag: HPY14_RS01100
• Genome accession: NZ_CP053798
• Coordinates: 237718..238725 (+)
• Length: 335 a.a.
• NCBI ID: WP_000224452.1
• Uniprot ID: A0A085RG68
• Organism: Vibrio cholerae strain SL5Y
• Function: promote competence gene expression (predicted from homology) Competence regulation

Genomic Context

Location: 232718..243725

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY14_RS01080 (HPY14_01080)	metJ	232722..233039 (+)	318	WP_000796267.1	met regulon transcriptional regulator MetJ	-
HPY14_RS01085 (HPY14_01085)	-	233150..234427 (-)	1278	WP_001278591.1	malic enzyme-like NAD(P)-binding protein	-
HPY14_RS01090 (HPY14_01090)	rpmE	234735..234953 (-)	219	WP_000643446.1	50S ribosomal protein L31	-
HPY14_RS01095 (HPY14_01095)	priA	235208..237412 (+)	2205	WP_094392829.1	primosomal protein N'	-
HPY14_RS01100 (HPY14_01100)	cytR	237718..238725 (+)	1008	WP_000224452.1	DNA-binding transcriptional regulator CytR	Regulator
HPY14_RS01105 (HPY14_01105)	-	238897..239448 (+)	552	WP_001884022.1	SPOR domain-containing protein	-
HPY14_RS01110 (HPY14_01110)	hslV	239585..240142 (+)	558	WP_000208249.1	ATP-dependent protease subunit HslV	-
HPY14_RS01115 (HPY14_01115)	hslU	240208..241539 (+)	1332	WP_001293366.1	HslU--HslV peptidase ATPase subunit	-
HPY14_RS01120 (HPY14_01120)	-	241643..242560 (+)	918	WP_001066162.1	1,4-dihydroxy-2-naphthoate polyprenyltransferase	-
HPY14_RS01125 (HPY14_01125)	rraA	242635..243150 (+)	516	WP_000456236.1	ribonuclease E activity regulator RraA	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 37018.59 Da
• Isoelectric Point: 7.0759

>NTDB_id=447402 HPY14_RS01100 WP_000224452.1 237718..238725(+) (cytR) [Vibrio cholerae strain SL5Y]
MATMKDVAQLAGVSTATVSRALMNPEKVSSSTRKRVEEAVLEAGYSPNSLARNLRRNESKTIVAIVPDICDPYFSEIIRG
IEDAAMEHGYLVLLGDSGQQKRRENSFVNLVFTKQADGMLLLGTDLPFDVSKPEQKNLPPMVMACEFAPELELPTVHIDN
LTSAFEAVNYLTQLGHKRIAQISGPQHAALCQFRHQGYQQALRRAGITMNPTYCTFGDFTFEAGAKAVRQLLALPEQPTA
IFCHNDTMAIGAIQEAKRLGLRVPQDLSVVGFDDIQFAQYCDPPLTTISQPRYEIGRQAMLMMLELLRGHDVRAGSRLLE
TKLVVRESAAPPSKK

Nucleotide

• Length: 1008 bp

>NTDB_id=447402 HPY14_RS01100 WP_000224452.1 237718..238725(+) (cytR) [Vibrio cholerae strain SL5Y]
ATGGCGACAATGAAGGATGTTGCCCAGCTTGCTGGAGTTTCAACCGCGACCGTGTCTCGTGCGTTGATGAATCCAGAGAA
AGTCTCGTCGTCCACTCGCAAACGAGTGGAAGAGGCCGTGCTGGAAGCGGGTTACTCACCCAATTCTTTGGCGCGCAATT
TGCGCCGTAATGAATCGAAAACCATCGTTGCTATCGTGCCAGATATCTGTGATCCCTACTTTTCTGAGATCATTCGCGGT
ATTGAAGATGCCGCGATGGAGCACGGTTATCTGGTGCTGTTGGGGGATAGTGGTCAACAGAAGCGTCGGGAGAACTCGTT
CGTTAATCTGGTGTTTACCAAACAGGCAGATGGTATGTTGCTGCTGGGGACAGATTTGCCGTTTGATGTGAGTAAACCTG
AGCAGAAAAACCTACCGCCTATGGTGATGGCGTGTGAATTTGCGCCAGAGCTGGAATTGCCAACGGTACACATTGATAAC
CTGACCTCGGCATTTGAGGCGGTAAACTATCTCACTCAGCTTGGGCACAAACGGATTGCGCAGATCTCCGGTCCACAACA
TGCTGCGCTGTGCCAATTCCGTCATCAAGGCTATCAACAGGCGCTGCGTCGTGCTGGCATCACCATGAACCCGACTTACT
GCACCTTTGGCGATTTCACTTTTGAAGCCGGGGCAAAAGCGGTGCGTCAGCTGTTGGCATTGCCTGAGCAGCCGACCGCG
ATTTTCTGTCACAACGATACGATGGCGATTGGCGCAATTCAGGAAGCGAAGCGACTTGGCTTGCGCGTACCGCAAGATCT
CTCCGTGGTTGGTTTTGACGATATTCAGTTTGCCCAGTACTGCGATCCCCCATTAACCACGATTTCGCAGCCGCGTTATG
AGATTGGCCGTCAAGCCATGCTGATGATGCTTGAGCTGCTTCGCGGACACGATGTGCGTGCAGGATCGCGTCTTTTGGAG
ACCAAGCTGGTCGTGCGTGAGAGTGCTGCGCCGCCAAGCAAGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial regulatory proteins, lacI family (LacI) (3-48)

• Periplasmic binding protein-like domain (Peripla_BP_3) (168-328)

3D structure

• AlphaFold DB: A0A085RG68

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
cytR	Vibrio cholerae C6706	100	100	1
cytR	Vibrio parahaemolyticus RIMD 2210633	90.719	99.701	0.904