Detailed information    

insolico Bioinformatically predicted

Overview

Name   cqsA   Type   Regulator
Locus tag   HPY13_RS16020 Genome accession   NZ_CP053797
Coordinates   465765..466934 (-) Length   389 a.a.
NCBI ID   WP_094392541.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 460765..471934
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS16015 (HPY13_16070) cqsS 463476..465536 (+) 2061 WP_094392542.1 quorum-sensing CAI-1 autoinducer sensor kinase/phosphatase CqsS Regulator
  HPY13_RS16020 (HPY13_16075) cqsA 465765..466934 (-) 1170 WP_094392541.1 alpha-hydroxyketone-type quorum-sensing autoinducer synthase Regulator
  HPY13_RS16025 (HPY13_16080) - 467131..468093 (-) 963 WP_046122015.1 TDT family transporter -
  HPY13_RS16030 (HPY13_16085) clcA 468240..469646 (-) 1407 WP_000107452.1 H(+)/Cl(-) exchange transporter ClcA -
  HPY13_RS16035 (HPY13_16090) - 470113..471102 (+) 990 WP_149608881.1 GTP-binding protein -

Sequence

Protein


Download         Length: 389 a.a.        Molecular weight: 43506.55 Da        Isoelectric Point: 6.2261

>NTDB_id=447394 HPY13_RS16020 WP_094392541.1 465765..466934(-) (cqsA) [Vibrio cholerae strain SL4G]
MNKPQLPDFIQNKIDHYIENYFDINKNGKHLVLGKQASPDDIILQSNDYLALANHPLIKARLAKSLLEEQQSLFMSASFL
QNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTICQPNTNVYIDFFAHMSLWEGARYANAQAHPFMHNNCDHLRM
LIQRHGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTFAY
RAGAIWCNNEVNRCVPFISYPAIFSSTLLPYEAAGLETTLDIIESADNRRQHLDRMARKLRIGLSQLGLTIRSESQIIGL
ETGDERNTEKVRDYLESNGVFGSVFCRPATSKNKNIIRLSLNSDVTDEQIAKIIEVCSDAVNCGDFYFR

Nucleotide


Download         Length: 1170 bp        

>NTDB_id=447394 HPY13_RS16020 WP_094392541.1 465765..466934(-) (cqsA) [Vibrio cholerae strain SL4G]
ATGAACAAGCCTCAACTTCCTGATTTTATTCAGAACAAGATAGATCACTATATTGAAAATTATTTTGATATAAACAAAAA
CGGTAAACACCTTGTATTGGGTAAACAAGCCAGCCCTGATGACATTATTTTGCAAAGTAATGATTATCTCGCATTGGCCA
ATCATCCGTTGATCAAAGCTCGTTTGGCGAAGTCATTACTGGAAGAACAACAAAGCTTATTTATGTCAGCCTCATTTCTA
CAAAATGACTATGACAAACCCATGATTGAGAAACGTTTGGCTAAGTTCACAGGCTTTGATGAATGTCTATTATCTCAATC
TGGTTGGAACGCAAACGTCGGTTTATTACAAACCATTTGCCAGCCCAATACGAATGTTTACATTGATTTTTTCGCGCACA
TGTCGTTATGGGAAGGGGCGCGCTACGCCAATGCTCAGGCGCATCCTTTTATGCATAATAACTGTGACCATTTACGTATG
CTGATTCAACGTCATGGCCCTGGGATCATTGTCGTAGACTCGATTTACAGCACGTTAGGTACGATTGCACCGCTAGCGGA
ACTGGTCAATATCAGTAAAGAGTTTGGCTGCGCCTTATTAGTCGATGAATCCCACTCTTTGGGCACACATGGCCCTAATG
GTGCAGGTTTATTGGCAGAATTAGGCCTCACTCGTGAAGTGCATTTTATGACCGCAAGTTTGGCCAAAACCTTTGCTTAT
CGCGCAGGAGCCATTTGGTGCAACAATGAAGTGAATCGCTGCGTTCCTTTTATTAGTTATCCGGCTATTTTTAGTTCTAC
TTTGCTGCCTTATGAAGCGGCAGGATTAGAAACGACTTTAGATATTATTGAATCTGCGGATAATCGTCGTCAGCATTTAG
ATCGTATGGCAAGAAAATTACGCATAGGATTATCCCAGCTGGGATTAACCATTCGCAGTGAAAGCCAAATTATTGGTCTA
GAAACAGGAGATGAACGAAATACCGAAAAAGTTCGGGATTATTTAGAAAGTAATGGAGTGTTTGGCTCAGTATTCTGCCG
CCCGGCAACTTCAAAGAATAAAAACATTATTCGCTTATCACTCAATAGTGATGTGACCGATGAGCAAATCGCCAAAATAA
TTGAGGTTTGCTCTGATGCGGTCAACTGCGGTGATTTTTATTTTCGTTAA

Domains

Predicted by InterproScan.

Aminotransferase class I and II (Aminotran_1_2)

(41-375)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cqsA Vibrio cholerae strain A1552

99.229

100

0.992