Detailed information NTG0447383

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY13_RS11460
• Genome accession: NZ_CP053796
• Coordinates: 2533192..2534199 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain SL4G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2528192..2539199

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY13_RS11450 (HPY13_11450)	cysM	2529355..2530242 (+)	888	WP_001279362.1	cysteine synthase CysM	-
HPY13_RS11455 (HPY13_11455)	mutS	2530510..2533098 (+)	2589	WP_095487753.1	DNA mismatch repair protein MutS	-
HPY13_RS11460 (HPY13_11460)	rpoS	2533192..2534199 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
HPY13_RS11465 (HPY13_11465)	nlpD	2534273..2535208 (-)	936	WP_000171040.1	murein hydrolase activator NlpD	-
HPY13_RS11470 (HPY13_11470)	-	2535208..2535834 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY13_RS11475 (HPY13_11475)	surE	2535827..2536579 (-)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
HPY13_RS11480 (HPY13_11480)	truD	2536581..2537666 (-)	1086	WP_085603391.1	tRNA pseudouridine(13) synthase TruD	-
HPY13_RS11485 (HPY13_11485)	ispF	2537696..2538172 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY13_RS11490 (HPY13_11490)	ispD	2538169..2538867 (-)	699	WP_095487745.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY13_RS11495 (HPY13_11495)	ftsB	2538864..2539148 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=447383 HPY13_RS11460 WP_000116735.1 2533192..2534199(-) (rpoS) [Vibrio cholerae strain SL4G]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447383 HPY13_RS11460 WP_000116735.1 2533192..2534199(-) (rpoS) [Vibrio cholerae strain SL4G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGTGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTAGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATTCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997