Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HPY13_RS08245 Genome accession   NZ_CP053796
Coordinates   1818714..1820138 (+) Length   474 a.a.
NCBI ID   WP_175249783.1    Uniprot ID   -
Organism   Vibrio cholerae strain SL4G     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1813714..1825138
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY13_RS08210 (HPY13_08215) - 1813826..1814560 (+) 735 WP_175249780.1 hypothetical protein -
  HPY13_RS08215 (HPY13_08220) yejK 1814598..1815599 (+) 1002 WP_053033954.1 nucleoid-associated protein YejK -
  HPY13_RS08220 (HPY13_08225) - 1815610..1815975 (+) 366 WP_175249781.1 hypothetical protein -
  HPY13_RS08225 (HPY13_08230) - 1816026..1816598 (+) 573 WP_175249782.1 3'-5' exoribonuclease -
  HPY13_RS08230 (HPY13_08235) - 1816651..1816911 (+) 261 WP_002051851.1 hypothetical protein -
  HPY13_RS08235 (HPY13_08240) - 1817046..1817342 (+) 297 WP_002051850.1 AlpA family transcriptional regulator -
  HPY13_RS08240 (HPY13_08245) - 1817339..1818532 (-) 1194 WP_002051848.1 site-specific integrase -
  HPY13_RS08245 (HPY13_08250) sbcB 1818714..1820138 (+) 1425 WP_175249783.1 exodeoxyribonuclease I Machinery gene
  HPY13_RS08250 (HPY13_08255) - 1820170..1820544 (+) 375 WP_046127346.1 CidA/LrgA family protein -
  HPY13_RS08255 (HPY13_08260) - 1820535..1821209 (+) 675 WP_046126653.1 LrgB family protein -
  HPY13_RS08260 (HPY13_08265) cdd 1821379..1822266 (+) 888 WP_046126652.1 cytidine deaminase -
  HPY13_RS08265 (HPY13_08270) - 1822425..1823300 (+) 876 WP_000462870.1 AEC family transporter -
  HPY13_RS08270 (HPY13_08275) purT 1823454..1824629 (+) 1176 WP_000468079.1 phosphoribosylglycinamide formyltransferase 2 -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54480.88 Da        Isoelectric Point: 5.9006

>NTDB_id=447372 HPY13_RS08245 WP_175249783.1 1818714..1820138(+) (sbcB) [Vibrio cholerae strain SL4G]
MKNDEQPSFFFFDYETWGVNPAKDRPSQFAGVRTDMDFNIIGEPLVIYCQLPNDYLPAPEAALITGITPQKANSQGLAEP
EFIARIHAELSTPNTTSLGYNSIRFDDEVTRYTCYRNFIDPYAWSWQHGNSRWDLLDVLRACHALRPEGIEWPENDDGFT
SFKLEHLSVANGIEHSNAHDAMADVIATIELAKKVKAAQPKLFDYFFTMRHKRKLTELIDIVNQTPLMHVSGMLGRERHY
TSWIVPIAWHPTNQNAVIVVDLGKDPQPLLELDAETLQARLYMRYEDLAPDELPVPVKLVHLNKCPILAPAKTLTAENAQ
KIGIDREQCLAHLNVIRQHPEIREKLVTVFSQEREFNQESDVDSQLYAGFFSPADRAAMEIIRTTAPENLGSLAIQVADK
RIEPLLFRYRARHYPHTLTDAEQRRWAAHCRDYFERNLEGYMLNLENLVHEHQADPKKMAILKSVYHYVEKLAC

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=447372 HPY13_RS08245 WP_175249783.1 1818714..1820138(+) (sbcB) [Vibrio cholerae strain SL4G]
ATGAAAAATGATGAACAGCCGTCATTCTTCTTTTTCGACTACGAGACTTGGGGAGTCAATCCCGCCAAAGATCGTCCTAG
TCAGTTTGCGGGTGTGCGTACCGATATGGACTTCAACATCATCGGTGAGCCTTTGGTGATTTACTGTCAACTGCCCAACG
ACTATTTGCCCGCTCCTGAAGCCGCATTGATCACAGGGATCACCCCTCAAAAAGCCAATAGCCAAGGTCTGGCGGAGCCC
GAATTTATCGCGCGTATTCATGCAGAACTCTCCACACCCAATACCACCAGCCTAGGTTATAACAGCATACGTTTTGATGA
TGAAGTGACGCGCTACACCTGCTATCGCAACTTTATCGACCCCTATGCTTGGAGCTGGCAACACGGCAATTCCCGTTGGG
ATCTGCTGGATGTGCTTCGCGCGTGTCATGCTTTGCGTCCTGAAGGTATCGAGTGGCCGGAAAATGATGACGGCTTTACC
AGCTTTAAACTGGAACATCTTTCTGTTGCCAACGGCATTGAGCACAGCAACGCGCACGATGCGATGGCCGATGTGATTGC
CACCATTGAACTGGCGAAAAAAGTCAAAGCCGCGCAGCCGAAATTGTTCGACTACTTCTTCACTATGCGCCACAAACGCA
AGCTGACAGAACTGATTGATATTGTGAACCAAACTCCGCTGATGCATGTTTCTGGCATGCTTGGGCGTGAGCGCCACTAC
ACCAGCTGGATTGTGCCGATTGCTTGGCATCCGACCAATCAAAATGCGGTGATTGTGGTGGATTTGGGTAAAGACCCTCA
GCCGCTGCTGGAGCTCGATGCCGAAACGCTGCAAGCGCGTCTCTATATGCGGTATGAAGACCTAGCACCGGATGAGCTAC
CAGTACCCGTGAAATTGGTGCATCTCAATAAATGCCCTATTCTGGCTCCGGCCAAAACCTTGACCGCAGAAAATGCACAA
AAGATTGGTATTGACCGCGAACAGTGTCTCGCGCACTTGAATGTGATTCGTCAACATCCCGAGATTCGTGAAAAGCTGGT
GACGGTATTTAGCCAAGAGCGCGAGTTTAACCAAGAGAGTGATGTGGATAGCCAACTCTATGCCGGCTTTTTCTCCCCAG
CCGATCGCGCGGCGATGGAGATCATCCGCACCACTGCACCGGAGAATCTGGGCAGCTTAGCGATACAGGTGGCAGATAAG
CGCATTGAACCACTGCTGTTTCGTTATCGTGCGCGCCATTATCCCCATACCTTAACCGATGCCGAGCAACGCCGCTGGGC
AGCGCATTGCCGTGACTATTTCGAGCGCAATCTAGAAGGTTATATGTTGAATTTGGAAAATCTGGTCCATGAACATCAAG
CTGATCCAAAGAAAATGGCGATTTTAAAATCCGTCTACCATTACGTGGAAAAACTCGCTTGCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (Exonuc_X-T_C)

(210-470)

Exonuclease (RNase_T)

(11-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

97.89

100

0.979