Detailed information NTG0447334

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HPY12_RS11755
• Genome accession: NZ_CP053794
• Coordinates: 2592247..2593254 (-)
• Length: 335 a.a.
• NCBI ID: WP_000116735.1
• Uniprot ID: A0A085SEX1
• Organism: Vibrio cholerae strain W10G
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2587247..2598254

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPY12_RS11745 (HPY12_11765)	cysM	2588410..2589297 (+)	888	WP_057567687.1	cysteine synthase CysM	-
HPY12_RS11750 (HPY12_11770)	mutS	2589565..2592154 (+)	2590	Protein_2279	DNA mismatch repair protein MutS	-
HPY12_RS11755 (HPY12_11775)	rpoS	2592247..2593254 (-)	1008	WP_000116735.1	RNA polymerase sigma factor RpoS	Regulator
HPY12_RS11760 (HPY12_11780)	nlpD	2593328..2594263 (-)	936	WP_000177559.1	murein hydrolase activator NlpD	-
HPY12_RS11765 (HPY12_11785)	-	2594263..2594889 (-)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HPY12_RS11770 (HPY12_11790)	surE	2594882..2595634 (-)	753	WP_057567688.1	5'/3'-nucleotidase SurE	-
HPY12_RS11775 (HPY12_11795)	truD	2595636..2596721 (-)	1086	WP_000129762.1	tRNA pseudouridine(13) synthase TruD	-
HPY12_RS11780 (HPY12_11800)	ispF	2596751..2597227 (-)	477	WP_000619207.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HPY12_RS11785 (HPY12_11805)	ispD	2597224..2597922 (-)	699	WP_001061954.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
HPY12_RS11790 (HPY12_11810)	ftsB	2597919..2598203 (-)	285	WP_001263189.1	cell division protein FtsB	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38504.37 Da
• Isoelectric Point: 4.3648

>NTDB_id=447334 HPY12_RS11755 WP_000116735.1 2592247..2593254(-) (rpoS) [Vibrio cholerae strain W10G]
MSVSNTVTKVEEFDFEDEALEVLETDAELASDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=447334 HPY12_RS11755 WP_000116735.1 2592247..2593254(-) (rpoS) [Vibrio cholerae strain W10G]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCGCCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACGCCAGAAGAAATTGCTCTTGAGTTAGATCGACCCGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCACACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCTCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTTACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAATGTCGAATACGACAACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

• Sigma-70, region 4 (Sigma70_r4) (263-316)

3D structure

• AlphaFold DB: A0A085SEX1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	99.701	100	0.997