Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HPY12_RS11615 Genome accession   NZ_CP053794
Coordinates   2565764..2566282 (-) Length   172 a.a.
NCBI ID   WP_001130229.1    Uniprot ID   -
Organism   Vibrio cholerae strain W10G     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2560764..2571282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPY12_RS11590 (HPY12_11610) rimM 2560873..2561427 (-) 555 WP_000061906.1 ribosome maturation factor RimM -
  HPY12_RS11595 (HPY12_11615) rpsP 2561455..2561703 (-) 249 WP_000256449.1 30S ribosomal protein S16 -
  HPY12_RS11600 (HPY12_11620) ffh 2561939..2563324 (-) 1386 WP_057567683.1 signal recognition particle protein -
  HPY12_RS11605 (HPY12_11625) - 2563537..2564331 (+) 795 WP_000369278.1 inner membrane protein YpjD -
  HPY12_RS11610 (HPY12_11630) - 2564414..2565694 (+) 1281 WP_000340990.1 HlyC/CorC family transporter -
  HPY12_RS11615 (HPY12_11635) luxS 2565764..2566282 (-) 519 WP_001130229.1 S-ribosylhomocysteine lyase Regulator
  HPY12_RS11620 (HPY12_11640) gshA 2566460..2568031 (-) 1572 WP_057567684.1 glutamate--cysteine ligase -
  HPY12_RS11625 (HPY12_11645) - 2568143..2570998 (-) 2856 WP_057567685.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19108.96 Da        Isoelectric Point: 5.2199

>NTDB_id=447332 HPY12_RS11615 WP_001130229.1 2565764..2566282(-) (luxS) [Vibrio cholerae strain W10G]
MPLLDSFTVDHTRMNAPAVRVAKTMQTPKGDTITVFDLRFTMPNKDILSERGIHTLEHLYAGFMRNHLNGSQVEIIDISP
MGCRTGFYMSLIGAPTEQQVAQAWLAAMQDVLKVESQEQIPELNEYQCGTAAMHSLEEAKVIAKNVIAAGISVNRNDELA
LPESMLNELKVH

Nucleotide


Download         Length: 519 bp        

>NTDB_id=447332 HPY12_RS11615 WP_001130229.1 2565764..2566282(-) (luxS) [Vibrio cholerae strain W10G]
ATGCCATTATTAGACAGTTTTACCGTCGATCATACCCGTATGAATGCACCGGCGGTGCGTGTTGCCAAAACCATGCAAAC
CCCAAAAGGGGATACGATTACCGTATTTGATTTGCGTTTTACTATGCCAAACAAAGATATTTTGTCTGAGCGCGGTATCC
ATACTCTAGAGCATCTCTACGCGGGCTTTATGCGTAATCACCTTAACGGCAGCCAAGTGGAGATCATCGATATTTCACCA
ATGGGTTGCCGTACAGGTTTCTACATGAGCTTGATTGGTGCGCCGACAGAACAGCAAGTGGCACAAGCATGGCTAGCCGC
AATGCAAGATGTGTTGAAAGTTGAAAGCCAAGAGCAAATTCCTGAGCTGAATGAGTACCAGTGCGGCACTGCGGCGATGC
ACTCGCTGGAAGAAGCCAAAGTGATTGCGAAAAACGTGATTGCGGCAGGTATCTCGGTTAACCGTAACGATGAGTTGGCG
CTGCCCGAATCTATGCTCAATGAGCTGAAGGTTCACTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

99.419

100

0.994