Detailed information NTG0447295

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: GE021_RS10055
• Genome accession: NZ_CP053792
• Coordinates: 2065296..2067740 (-)
• Length: 814 a.a.
• NCBI ID: WP_164406662.1
• Uniprot ID: -
• Organism: Streptococcus canis strain HL_77_1
• Function: degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 2060296..2072740

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE021_RS10030 (GE021_010020)	-	2060300..2060770 (+)	471	WP_125073726.1	8-oxo-dGTP diphosphatase	-
GE021_RS10035 (GE021_010025)	-	2061113..2062330 (-)	1218	WP_125073725.1	MFS transporter	-
GE021_RS10040 (GE021_010030)	-	2062336..2062851 (-)	516	WP_125073724.1	lanthionine synthetase LanC family protein	-
GE021_RS11155	-	2062832..2062912 (-)	81	Protein_1955	XRE family transcriptional regulator	-
GE021_RS10045 (GE021_010035)	groL	2063167..2064792 (-)	1626	WP_003045626.1	chaperonin GroEL	-
GE021_RS10050 (GE021_010040)	groES	2064828..2065118 (-)	291	WP_003045628.1	co-chaperone GroES	-
GE021_RS10055 (GE021_010045)	clpC	2065296..2067740 (-)	2445	WP_164406662.1	ATP-dependent Clp protease ATP-binding subunit	Regulator
GE021_RS10060 (GE021_010050)	-	2067740..2068201 (-)	462	WP_125073722.1	CtsR family transcriptional regulator	-
GE021_RS10065 (GE021_010055)	-	2068400..2068603 (-)	204	WP_003045634.1	cold-shock protein	-
GE021_RS10070 (GE021_010060)	-	2069012..2069968 (+)	957	WP_125073721.1	amidohydrolase family protein	-
GE021_RS10075 (GE021_010065)	-	2070119..2070547 (+)	429	WP_125073720.1	MarR family winged helix-turn-helix transcriptional regulator	-
GE021_RS10080 (GE021_010070)	-	2070561..2071952 (+)	1392	WP_164406660.1	GNAT family N-acetyltransferase	-
GE021_RS10085 (GE021_010075)	-	2072050..2072328 (+)	279	WP_003045642.1	GNAT family N-acetyltransferase	-

Sequence

Protein

• Length: 814 a.a.
• Molecular weight: 90343.02 Da
• Isoelectric Point: 6.7392

>NTDB_id=447295 GE021_RS10055 WP_164406662.1 2065296..2067740(-) (clpC) [Streptococcus canis strain HL_77_1]
MIMYSLKMQEIFRQAQFQAARFDSHYLETWHILLAMARVDQSLAGLVLSEFDAKVAVEEYEAAAILAIGKSPKDQVSHVD
FKPQSKTLTNVLQFAQAISQITKDPEVGSEHVLFAMLLNPDIMASRLLEMAGYRIKDKGNGEPRLADLRKAIEIHAGYSK
ETIKTIHELRKPKKTKVQGTFSDMMKPPSTTGDLADFTRDLTEMAKQGLLEPVIGRDVEVSRMIQVLSRKTKNNPVLVGD
AGVGKTALAYGLAQRIVNGAIPYELQDMRVLELDMMSVVAGTRFRGDFEERMNQIIDDIEADGKIILFVDELHTIMGSGS
GIDSTLDAANILKPALSRGTLHMVGATTQEEYQKHIEKDAALSRRFAKILIEEPNLEDAYQILLGLKTSYETYHNVSISD
QAVHTAVKMAHRYLTSKNLPDSAIDLLDEASATVQSMVKKSSPEIITPIDQALLDGDIKKVSRLLAKEAKGQTRRPRPVT
EDDIMATLSKLSGIPLEKLSQADSKKYLNLEKELHKRVIGQEDAVSAISRAIRRNQSGIRTGKRPIGSFMFLGPTGVGKT
ELAKALAEVLFDDASALIRFDMSEYMEKFAASRLNGAPPGYVGYDEGGELTEKVRNKPYSVLLFDEVEKAHPDIFNVLLQ
VLDDGMLTDSRGRKVDFSNTIIIMTSNLGATALRDDKTVGFGAKGVSHDHQAMEKRILEELKKAYRPEFINRIDEKVVFH
SLTQENMREVVKIMVQPLIASLAEKGITLKFQPMALKYLSEEGYDVEMGARPLRRTLQTQVEDKLSELILAGDLASGHTL
KIGLSHGKLSFNVG

Nucleotide

• Length: 2445 bp

>NTDB_id=447295 GE021_RS10055 WP_164406662.1 2065296..2067740(-) (clpC) [Streptococcus canis strain HL_77_1]
ATGATCATGTATTCATTGAAGATGCAAGAAATCTTTAGGCAGGCACAGTTTCAAGCAGCCCGCTTTGACAGCCACTACCT
AGAAACTTGGCATATCTTGCTAGCCATGGCTAGAGTTGACCAGTCCTTAGCAGGTCTAGTGCTAAGTGAATTTGATGCTA
AAGTTGCAGTGGAAGAGTACGAAGCTGCCGCTATTTTAGCTATAGGAAAAAGTCCTAAAGATCAGGTGTCACACGTGGAT
TTCAAGCCTCAATCCAAGACCTTGACGAATGTGTTACAGTTTGCGCAGGCTATTAGTCAAATCACTAAAGACCCAGAAGT
CGGCTCTGAGCATGTGCTCTTTGCCATGCTACTCAATCCTGATATTATGGCAAGTCGTCTCTTGGAAATGGCTGGGTATC
GCATCAAAGATAAAGGAAATGGGGAACCTCGCTTAGCTGATTTGCGAAAGGCCATTGAGATTCACGCAGGTTATAGCAAA
GAAACTATTAAGACTATCCATGAGTTACGCAAACCAAAGAAAACGAAGGTTCAAGGAACCTTCTCAGATATGATGAAGCC
ACCAAGCACGACGGGTGATTTGGCTGACTTCACCAGAGATTTGACCGAGATGGCAAAACAAGGTCTGCTAGAGCCTGTCA
TTGGTCGTGATGTCGAAGTATCTCGCATGATTCAAGTGCTCAGTCGTAAAACCAAAAACAATCCTGTTCTTGTTGGAGAT
GCAGGGGTTGGTAAAACTGCCCTTGCCTATGGTCTTGCCCAACGTATTGTGAATGGAGCCATTCCTTATGAATTGCAAGA
CATGCGCGTCCTCGAATTGGACATGATGAGCGTCGTTGCGGGGACACGTTTTCGTGGTGATTTTGAAGAACGCATGAACC
AGATTATTGATGACATTGAAGCAGATGGCAAGATTATCCTCTTTGTGGATGAATTGCATACCATTATGGGGTCAGGAAGC
GGTATTGATAGCACACTTGATGCTGCTAATATTTTGAAACCAGCCCTATCTCGTGGCACCCTTCACATGGTCGGAGCAAC
CACGCAGGAAGAGTACCAAAAACATATTGAAAAGGACGCTGCTCTTTCTCGCCGCTTTGCCAAAATTTTAATTGAAGAGC
CTAACCTAGAAGACGCCTATCAGATTTTACTAGGTTTGAAGACTTCCTATGAAACCTACCATAATGTGTCAATTTCTGAT
CAGGCAGTGCATACAGCTGTTAAAATGGCGCATCGCTACCTAACTAGTAAAAATCTTCCAGATTCAGCCATCGATTTGTT
GGACGAAGCTAGCGCTACAGTCCAAAGCATGGTTAAAAAATCAAGTCCGGAAATCATCACACCAATAGATCAGGCACTTC
TTGACGGTGATATAAAAAAGGTTTCACGTCTTTTGGCCAAAGAAGCTAAGGGGCAGACGAGAAGGCCAAGGCCAGTAACA
GAAGACGATATTATGGCAACCCTGAGCAAATTATCAGGGATTCCATTGGAAAAACTCAGTCAGGCTGATAGCAAAAAATA
CCTCAATCTTGAAAAAGAATTGCACAAGCGCGTGATTGGACAAGAAGACGCTGTTTCAGCCATTTCTAGAGCAATCCGTC
GTAATCAATCAGGTATTCGCACTGGTAAACGTCCAATTGGTTCTTTCATGTTCCTTGGACCTACTGGTGTTGGGAAGACT
GAATTGGCTAAAGCTTTGGCAGAAGTCCTCTTTGATGACGCATCAGCCCTTATCCGCTTTGACATGTCAGAGTATATGGA
AAAATTTGCGGCATCTCGCCTTAATGGAGCGCCTCCAGGCTATGTCGGTTACGATGAGGGCGGTGAACTAACAGAGAAGG
TCAGAAATAAGCCTTATTCTGTCCTCCTCTTTGACGAGGTGGAAAAAGCCCACCCTGACATTTTCAACGTGCTCTTACAA
GTGCTTGATGACGGTATGTTGACAGATAGCCGTGGGCGTAAGGTAGACTTTTCAAACACCATTATTATCATGACTAGTAA
TTTAGGGGCGACCGCCCTTCGTGATGATAAAACGGTTGGCTTTGGGGCAAAAGGGGTCAGCCATGACCACCAAGCCATGG
AAAAACGAATTTTGGAAGAATTGAAAAAAGCTTATCGACCAGAATTTATCAACCGAATTGATGAAAAGGTTGTCTTCCAT
AGCCTTACCCAAGAGAATATGAGGGAAGTGGTTAAGATTATGGTGCAGCCATTGATTGCTAGTTTGGCAGAAAAAGGCAT
TACCCTCAAATTCCAGCCAATGGCTCTCAAGTACCTTTCAGAGGAAGGCTATGATGTGGAAATGGGTGCTCGTCCATTGC
GCCGTACTTTGCAAACGCAGGTAGAAGACAAACTATCCGAATTGATTCTTGCGGGTGACTTGGCAAGTGGTCACACCCTG
AAAATTGGGCTTTCCCATGGCAAACTCAGCTTTAACGTTGGGTAA

Domains

Predicted by InterproScan.

• AAA domain (Cdc48 subfamily) (AAA_2) (544-715)

• AAA lid domain (AAA_lid_9) (376-458)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (95-132)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (15-53)

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (722-801)

• ATPase family associated with various cellular activities (AAA) (AAA) (236-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Streptococcus mutans UA159	76.261	99.877	0.762
clpC	Streptococcus thermophilus LMD-9	72.426	100	0.726
clpC	Streptococcus thermophilus LMG 18311	72.426	100	0.726
clpC	Streptococcus pneumoniae TIGR4	65.725	100	0.657
clpC	Streptococcus pneumoniae Rx1	65.725	100	0.657
clpC	Streptococcus pneumoniae D39	65.725	100	0.657
clpC	Lactococcus lactis subsp. lactis strain DGCC12653	48.449	100	0.499
clpC	Bacillus subtilis subsp. subtilis str. 168	43.63	100	0.446