Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ST4052_RS06525 Genome accession   NZ_CP065476
Coordinates   1258198..1260165 (-) Length   655 a.a.
NCBI ID   WP_347100844.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4052     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1253198..1265165
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4052_RS06505 (ST4052_06580) - 1253700..1254629 (-) 930 WP_002951426.1 ATP-binding cassette domain-containing protein -
  ST4052_RS06510 (ST4052_06585) amiE 1254622..1255707 (-) 1086 WP_011226304.1 ABC transporter ATP-binding protein Regulator
  ST4052_RS06515 (ST4052_06590) amiD 1255717..1256643 (-) 927 WP_002946409.1 oligopeptide ABC transporter permease OppC Regulator
  ST4052_RS06520 (ST4052_06595) amiC 1256643..1258136 (-) 1494 WP_011227407.1 ABC transporter permease Regulator
  ST4052_RS06525 (ST4052_06600) amiA 1258198..1260165 (-) 1968 WP_347100844.1 peptide ABC transporter substrate-binding protein Regulator
  ST4052_RS06530 (ST4052_06605) - 1260369..1260559 (-) 191 Protein_1231 IS3 family transposase -
  ST4052_RS06535 - 1260553..1260954 (-) 402 Protein_1232 ABC transporter ATP-binding protein -
  ST4052_RS06540 (ST4052_06620) - 1260949..1261309 (-) 361 Protein_1233 TatD family hydrolase -
  ST4052_RS06545 (ST4052_06625) - 1261658..1262863 (+) 1206 WP_011227415.1 OFA family MFS transporter -
  ST4052_RS06550 (ST4052_06630) - 1262909..1264261 (-) 1353 Protein_1235 IS3 family transposase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 71629.59 Da        Isoelectric Point: 5.0386

>NTDB_id=447294 ST4052_RS06525 WP_347100844.1 1258198..1260165(-) (amiA) [Streptococcus thermophilus strain 4052]
MKKSKWLALAGAALLGVGVLAACSSKSSTSGTTYSNIYGSDPETLDYITSIMGGTKAVLTNGVDGLMEADKYGNLVPSVA
EDWSVSKDGLTYTYKIRKGIKWYTSEGEEYANVTAKDFVTGLKHAADAKSGALYLVQDSIAGLSDYLSGANKDFSNVGVK
AIDDYTLQYTLKKQEPYWNSKTTYGVLFPVNEDFLKNKGKDFGKSTDPTSILYNGPFLLKSLTAKSSIELTKNENYWDKK
NVHFDSIKFSYSDGSDLESIERSFSDGALSIARVFPTSSNYASVEKKYKDNIFYTEPGASTSVIGVNIDRQSYKFSAKKT
DAEKTSTKKALLNKDFRQSINFAIDRTAYQSQVNGKDGAALALRNLFVPYDFVSAGDKTFGDLVTEKMSSYGDEWSGVNF
ADGQDGLYNAEKAKTEFAKAKEALQGEGVQFPVHLDLPVDQSSKLSVAQAQSLKQTIEKSLGSENVVIDINQMSSDDMNN
VTSNAANAAAEDWDISNGAGWGPDYQDPSTYLDILKTTSSENTKIFNGYDDPNNAAAAQVGLKDYDALLDSAASETTDIN
ARYDRYAQAQAWLEDSSLIIPLTVSNGAAPVISRLTPFTGASIQVGDKGSSYVKYVKSQEKVVTKKEYEQSREKWLKERK
ASNEKAQKDLEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=447294 ST4052_RS06525 WP_347100844.1 1258198..1260165(-) (amiA) [Streptococcus thermophilus strain 4052]
ATGAAAAAAAGCAAATGGTTGGCTCTCGCGGGTGCAGCACTTCTAGGTGTTGGTGTGTTAGCGGCTTGTTCTTCTAAGTC
AAGTACTAGTGGAACGACTTATAGTAATATTTATGGCTCAGATCCAGAAACCTTGGATTATATTACATCAATTATGGGAG
GGACAAAAGCTGTTTTGACTAATGGTGTAGATGGTCTTATGGAAGCGGACAAATATGGTAATCTTGTTCCATCAGTAGCT
GAAGACTGGTCTGTGTCTAAAGATGGTCTGACTTATACCTATAAAATTCGTAAAGGGATCAAATGGTATACTTCTGAAGG
TGAAGAGTACGCTAATGTTACTGCTAAGGACTTTGTAACGGGTCTTAAGCATGCAGCTGATGCCAAATCTGGAGCCCTTT
ATTTGGTACAAGATTCTATTGCTGGATTGTCTGACTACCTTTCTGGTGCCAATAAAGATTTCTCAAATGTTGGCGTTAAA
GCAATAGACGATTACACTCTGCAATACACACTAAAAAAACAGGAACCATACTGGAACTCTAAGACAACCTATGGTGTGCT
CTTCCCAGTTAACGAAGACTTTCTTAAGAACAAAGGGAAAGATTTTGGTAAGTCAACAGACCCAACCTCTATCCTATATA
ACGGTCCTTTCCTTCTTAAATCTTTGACAGCTAAATCATCTATCGAGTTGACTAAGAATGAGAATTATTGGGATAAGAAA
AACGTGCATTTTGACTCTATCAAATTCTCATATTCTGATGGATCGGATCTAGAATCAATAGAACGTAGTTTCTCTGACGG
CGCTCTCAGCATTGCACGTGTCTTCCCTACGAGTTCAAACTATGCATCGGTAGAAAAAAAATATAAAGATAATATTTTTT
ACACAGAACCAGGTGCATCTACATCGGTTATTGGTGTAAACATTGACCGCCAAAGCTATAAATTCTCAGCTAAGAAGACA
GATGCTGAAAAGACATCAACTAAGAAGGCTCTTCTAAACAAAGACTTTCGTCAATCAATCAACTTCGCTATTGATCGTAC
AGCCTATCAATCACAAGTAAACGGTAAAGATGGCGCAGCTCTTGCTCTACGTAACCTTTTTGTTCCTTATGATTTTGTCA
GTGCAGGTGATAAGACCTTTGGTGATCTTGTGACAGAAAAAATGAGCTCTTATGGTGATGAGTGGTCTGGTGTTAACTTT
GCAGATGGTCAAGACGGTCTCTACAATGCTGAAAAAGCTAAGACTGAGTTTGCCAAAGCCAAAGAGGCTCTTCAAGGAGA
AGGGGTACAATTCCCAGTTCACTTAGACCTTCCAGTTGATCAAAGTTCTAAACTTAGTGTTGCTCAAGCTCAATCTTTGA
AACAAACCATTGAAAAATCATTGGGTAGCGAAAATGTTGTTATAGATATTAACCAAATGTCATCTGATGACATGAATAAT
GTGACTAGTAATGCGGCAAATGCGGCAGCAGAAGACTGGGATATTTCTAACGGTGCAGGTTGGGGTCCAGACTATCAAGA
TCCATCAACTTATCTTGATATCTTAAAAACAACATCAAGTGAAAATACCAAGATTTTCAATGGTTATGATGATCCAAACA
ATGCAGCAGCAGCCCAAGTAGGTCTTAAGGATTATGATGCCTTGCTTGATTCAGCAGCTTCAGAAACAACAGACATCAAC
GCTCGTTACGACCGTTATGCTCAAGCCCAAGCTTGGTTGGAAGATAGCTCTCTTATCATTCCATTGACTGTTAGTAACGG
TGCAGCACCAGTTATCTCACGTTTGACACCATTTACGGGTGCTAGCATACAGGTGGGTGATAAGGGCTCATCCTACGTCA
AATATGTGAAATCACAAGAAAAAGTAGTTACTAAGAAAGAATATGAACAAAGTCGTGAAAAATGGCTTAAAGAAAGGAAA
GCATCTAACGAAAAAGCTCAAAAAGATCTTGAGAAACACGTTAAATAA

Domains

Predicted by InterProScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

89.482

100

0.896
  amiA3 Streptococcus thermophilus LMG 18311

87.519

100

0.878
  amiA3 Streptococcus thermophilus LMD-9

87.519

100

0.878