Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GE021_RS09745 Genome accession   NZ_CP053792
Coordinates   1994543..1995904 (-) Length   453 a.a.
NCBI ID   WP_125074689.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1989543..2000904
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS09715 (GE021_009705) - 1989579..1989842 (-) 264 WP_254388091.1 hypothetical protein -
  GE021_RS09720 (GE021_009710) - 1989977..1990654 (-) 678 WP_125074956.1 hypothetical protein -
  GE021_RS09725 (GE021_009715) - 1990658..1991104 (-) 447 WP_125074957.1 LytTR family DNA-binding domain-containing protein -
  GE021_RS09730 (GE021_009720) - 1991575..1992777 (+) 1203 WP_302051309.1 IS110 family transposase -
  GE021_RS09735 (GE021_009725) - 1992982..1993704 (-) 723 WP_125074687.1 TIGR00266 family protein -
  GE021_RS09740 (GE021_009730) - 1993858..1994352 (-) 495 WP_125074688.1 carbonic anhydrase -
  GE021_RS09745 (GE021_009735) radA 1994543..1995904 (-) 1362 WP_125074689.1 DNA repair protein RadA Machinery gene
  GE021_RS09750 (GE021_009740) - 1996002..1996448 (-) 447 WP_003045504.1 dUTP diphosphatase -
  GE021_RS09755 (GE021_009745) - 1996661..1997515 (-) 855 WP_125074690.1 Abi family protein -
  GE021_RS09760 (GE021_009750) - 1997671..1998438 (-) 768 WP_125074691.1 epoxyqueuosine reductase QueH -
  GE021_RS09765 (GE021_009755) - 1998556..2000340 (-) 1785 WP_125074692.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49254.64 Da        Isoelectric Point: 6.6509

>NTDB_id=447294 GE021_RS09745 WP_125074689.1 1994543..1995904(-) (radA) [Streptococcus canis strain HL_77_1]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGDIDNEFYLYAETNMQAIRSEVE
NLQPDFLIIDSIQTIMSPEITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPSIFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEAAKLGFTKIYAPKNALQGIAIPKGIAVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=447294 GE021_RS09745 WP_125074689.1 1994543..1995904(-) (radA) [Streptococcus canis strain HL_77_1]
ATAGCAAAGAAAAAAGCGACCTTCATTTGTCAAGAGTGTGGCTACCAGTCACCCAAATATTTAGGGCGCTGTCCAAACTG
TTCAGCCTGGTCTTCTTTTGTGGAAGAAGTGGAGGTCAAAGAAGTCAAAAATGCTCGTGTTAGTTTGACAGGCGAGAAGA
GTAAACCTGTTAAACTAAAAGATGTGGACAATATCAGCTATCATCGGACACAGACCGATATGGCAGAGTTTAACCGTGTT
CTCGGTGGCGGTGTCGTTCCAGGAAGTTTGGTCTTAATCGGTGGCGATCCAGGTATTGGAAAATCCACCTTGCTCTTGCA
GGTATCCACCCAGCTAGCCAATAAGGGAACCGTTCTCTATGTCTCTGGGGAAGAATCAGCAGAGCAGATTAAACTGCGCA
GTGAGCGCTTGGGGGATATTGACAATGAATTTTACCTCTATGCTGAGACTAACATGCAGGCCATTCGGTCAGAAGTTGAA
AACTTGCAGCCAGATTTCTTGATTATTGATTCTATTCAAACCATTATGAGCCCTGAGATTACAGGTGTTCAAGGATCAGT
CAGTCAAGTTAGAGAAGTCACTGCAGAATTGATGCAGTTGGCAAAGACCAATAATATTGCAACCTTTATTGTGGGGCATG
TCACCAAGGAAGGGACTTTGGCAGGACCTCGTATGTTAGAACACATGGTGGACACCGTTCTCTACTTTGAGGGGGAAAGG
CATCATACTTTTCGTATTTTGCGGGCTGTGAAAAATCGCTTTGGCTCGACGAATGAGATTGGTATTTTTGAAATGCAGTC
AGCTGGACTTGTTGAGGTTCTAAATCCAAGTCAAGTCTTTCTTGAAGAGCGTTTAGATGGTGCCACAGGTTCAGCCATCG
TGGTAACCATGGAAGGCAGCCGACCGATTTTAGCGGAGGTTCAATCTTTAGTAACACCATCTATTTTTGGCAATGCTAGA
CGAACCACAACTGGACTTGATTTCAATCGTGTAAGCCTCATTATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTTTTACA
AAATCAAGATGCCTACCTTAAATCGGCTGGAGGTGTCAAATTGGATGAGCCTGCTATTGATTTGGCAGTCGCTGTGGCCA
TTGCTTCTAGTTACAAGGAAAAACCAACTAGCCCACAAGAAGCTTTCTTAGGCGAGATTGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAACAACGGATTAATGAAGCAGCCAAGCTAGGATTTACTAAAATCTACGCCCCTAAAAATGCTCT
GCAAGGGATTGCTATTCCAAAAGGAATTGCTGTGGTTGGGGTAACTACCGTTGGCCAAGTGTTAAAAGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(57-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

87.168

99.779

0.87
  radA Streptococcus pneumoniae D39

87.168

99.779

0.87
  radA Streptococcus pneumoniae R6

87.168

99.779

0.87
  radA Streptococcus pneumoniae TIGR4

87.168

99.779

0.87
  radA Streptococcus mitis NCTC 12261

87.168

99.779

0.87
  radA Streptococcus mitis SK321

86.947

99.779

0.868
  radA Bacillus subtilis subsp. subtilis str. 168

61.269

100

0.618