Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GE021_RS08430 Genome accession   NZ_CP053792
Coordinates   1714848..1715573 (-) Length   241 a.a.
NCBI ID   WP_164407321.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_1     
Function   export ComS (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1716513..1718036 1714848..1715573 flank 940


Gene organization within MGE regions


Location: 1714848..1718036
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS08430 (GE021_008420) pptA 1714848..1715573 (-) 726 WP_164407321.1 ABC transporter ATP-binding protein Regulator
  GE021_RS08435 (GE021_008425) - 1715645..1716064 (+) 420 WP_125074751.1 HIT family protein -
  GE021_RS08440 (GE021_008430) - 1716061..1716378 (+) 318 WP_164407319.1 chemotaxis protein -
  GE021_RS08445 (GE021_008435) - 1716513..1717999 (+) 1487 Protein_1632 IS1182 family transposase -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26643.01 Da        Isoelectric Point: 4.9831

>NTDB_id=447288 GE021_RS08430 WP_164407321.1 1714848..1715573(-) (pptA) [Streptococcus canis strain HL_77_1]
MLNIENLTGGYLNIPVLKEVSFSVGNRELVGLIGLNGAGKSTTINEIIGFLKPYKGEISIDGLTLAENPADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAQKRAKPFLDMFRLTDKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIKTLEIEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQVRAQGTLAELQATFGDPSASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=447288 GE021_RS08430 WP_164407321.1 1714848..1715573(-) (pptA) [Streptococcus canis strain HL_77_1]
ATGTTAAACATTGAAAATCTAACGGGAGGCTACCTCAATATTCCCGTTTTAAAAGAGGTCTCATTTTCTGTTGGCAATAG
AGAATTGGTCGGTTTAATCGGGTTAAATGGAGCTGGAAAGTCAACGACCATCAATGAAATTATTGGTTTTTTAAAACCCT
ACAAGGGAGAAATCTCCATTGACGGCCTTACGCTGGCTGAAAATCCAGCAGACTACCGTAAAAAAATTGGTTTTATCCCA
GAAACTCCTAGTCTTTACGAAGAATTAACCTTGGCAGAGCATATTAATACTGTGGCTATGGCCTACGATATTGATGTGGA
GTTGGCTCAGAAACGGGCAAAGCCTTTTTTAGACATGTTTCGCTTGACAGATAAACTCGACTGGTTTCCTGTACATTTTT
CAAAGGGCATGAAGCAAAAAGTCATGATTATTTGTGCTTTTGTGATTGATCCCAGCTTGTTTATCCTTGATGAGCCTTTT
TTAGGGTTAGATCCACTAGCTATTTCGGACTTGATTAAGACTTTAGAGATTGAAAAAGCCAAAGGCAAATCGATTTTAAT
GAGTACTCACGTGCTAGACTCTGCTGAAAAAATGTGTGATCGTTTTGTGATTTTGCACCATGGTCAGGTGCGTGCTCAAG
GAACTCTTGCTGAGTTACAAGCGACTTTTGGAGATCCTTCGGCTAGCTTAAACGATATTTATTTGGCATTGACAAAAGAG
GGCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.314

99.17

0.747
  pptA Streptococcus thermophilus LMD-9

74.477

99.17

0.739