Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GE021_RS07035 Genome accession   NZ_CP053792
Coordinates   1409966..1411768 (-) Length   600 a.a.
NCBI ID   WP_125074394.1    Uniprot ID   A0A3P5XQ15
Organism   Streptococcus canis strain HL_77_1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404966..1416768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE021_RS07005 (GE021_007005) - 1405754..1406461 (-) 708 WP_125074418.1 O-methyltransferase -
  GE021_RS07010 (GE021_007010) - 1406516..1407724 (-) 1209 WP_093998761.1 OFA family MFS transporter -
  GE021_RS07015 (GE021_007015) - 1407831..1407905 (-) 75 Protein_1359 HAD family phosphatase -
  GE021_RS07020 (GE021_007020) - 1407902..1408582 (-) 681 WP_125074417.1 HAD-IA family hydrolase -
  GE021_RS07025 (GE021_007025) - 1408582..1409124 (-) 543 WP_125074416.1 GNAT family N-acetyltransferase -
  GE021_RS07030 (GE021_007030) - 1409388..1409777 (-) 390 WP_254388076.1 NADPH-dependent FMN reductase -
  GE021_RS07035 (GE021_007035) pepF 1409966..1411768 (-) 1803 WP_125074394.1 oligoendopeptidase F Regulator
  GE021_RS07040 (GE021_007040) - 1411781..1412743 (-) 963 WP_125074393.1 competence protein CoiA -
  GE021_RS07045 (GE021_007045) - 1412860..1414023 (-) 1164 WP_125074392.1 MFS transporter -
  GE021_RS07050 (GE021_007050) - 1414114..1414830 (-) 717 WP_125074391.1 pseudouridine synthase -
  GE021_RS07055 (GE021_007055) nagB 1414948..1415652 (-) 705 WP_125074390.1 glucosamine-6-phosphate deaminase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69318.22 Da        Isoelectric Point: 4.6868

>NTDB_id=447280 GE021_RS07035 WP_125074394.1 1409966..1411768(-) (pepF) [Streptococcus canis strain HL_77_1]
MTDNRSHLEEKYTWDLSTIFATDEMWEAEVSQLATDVEASKEFAGHLLDSSANLLKITETYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMTLSQEDYQTFLTETPELKGYNHFFDKLFQAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPTVKNDKGKDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHRYDSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLTLRREVLGLDELKMYDVYTPLSDTDLAIGYDEALE
KAEKVLAIFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYADLNEKYYGLSKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLAYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLIELEALVAKGVHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=447280 GE021_RS07035 WP_125074394.1 1409966..1411768(-) (pepF) [Streptococcus canis strain HL_77_1]
ATGACTGATAATCGTAGCCACTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACTGATGAGATGTGGGA
AGCAGAGGTGAGCCAATTAGCTACTGATGTTGAGGCTTCTAAAGAGTTTGCTGGTCATTTGCTGGATTCTAGTGCTAATT
TGTTAAAGATTACAGAGACGTATTTAGAATTGGCTCGTCGTGTGGAGAAAGTTTATGTTTATGCTCACATGAAAAATGAC
CAAGACACTACCGTTGCCAAGTATCAAGAATACCAAGCTAAGGCTTCAGGCTTGTATGCCAAATTTAGTGAGGTCTTTTC
ATTCTATGATCCAGAAGTAATGACGCTTAGTCAAGAGGATTACCAAACTTTCCTTACGGAAACCCCTGAGTTGAAAGGGT
ATAATCATTTCTTTGACAAATTATTCCAAGCACGCGAACATGTTCTCAGTCAAGCGGAAGAGGAATTATTAGCAGGGGCT
CAAGAAATTTTTAATGGTGCGGAAGAAACCTTTAGTATTCTTGATAATGCGGACATTGTTTTCCCGACGGTCAAAAATGA
TAAAGGTAAAGATGTTGAATTAACCCATGGTAATTTCATTAGCTTAATGGAATCTAAGGACCGTAGCGTTCGCCAAGCTG
CTTACGAAGCCATGTATAGCACCTATGAGCAGTTCCAGCATACTTACGCTAAAACGTTGCAAACAAATGTGAAAGTGCAA
AACTATAAGGCGCGTGTTCATAGATACGATTCAGCTCGTCAGGCCGCCATGGCTGCTAACTTTATTCCTGAAGCTGTTTA
CGATACTTTATTAGAGACTGTCAATAAACATTTGCCACTTTTACACCGTTATTTGACATTACGTCGAGAAGTTCTTGGTC
TAGACGAGTTGAAAATGTATGATGTTTACACACCATTATCTGACACTGATTTGGCTATTGGCTATGATGAGGCTTTGGAA
AAGGCTGAGAAGGTTTTGGCCATTTTTGGTAAAGATTATGCAGACCGTGTGCACCGTGCTTTTACCGAACGTTGGATTGA
TGTTCATGTTAATAAAGGCAAACGCTCTGGAGCTTATTCAGGTGGTTCTTATGATACCAATGCCTTCATGTTGTTGAACT
GGCAAGATACACTTGATAATCTTTACACACTTGTCCACGAAACAGGCCACAGCTTGCATTCTACGTTTACCCGTGAAACA
CAACCTTATGTGTATGGGGACTATAGTATTTTTTTGGCAGAAATTGCCTCAACAACGAATGAAAATATTATGACAGAAGC
TCTTTTAAATGAAGTTCAAGATGAGAAAGAACGCTTTGCGATTTTAAACCATTACCTTGATGGTTTCCGTGGAACAGTTT
TTCGTCAAACCCAATTTGCTGAGTTTGAACATGCTATTCACCAAGCTGATCAAAAAGGAGAAGTGTTAACAAGCGAATAC
CTTAACCAATTATACGCTGATTTAAACGAAAAATATTATGGTTTAAGTAAAGAGGATAATCATTTTATTCAGTATGAGTG
GGCACGTATTCCTCACTTCTATTACAATTATTATGTTTACCAATATGCAACAGGTTTTGCAGCCGCAAGCTATTTAGCAG
ATAAGATTGTTCACGGAACACAAGATGATATTGATCATTACTTGGCCTATCTCAAGTCAGGAAATTCTGATTACCCACTT
GAAGTGATTGCTAAAGCAGGCGTTGATATGGCAAAAGGGGACTATTTGGAAGCTGCCTTTAAGGTCTTTGAAGAACGCTT
AATAGAACTCGAAGCCCTCGTTGCAAAGGGTGTTCACCGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3P5XQ15

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.786

99.833

0.717