Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GE022_RS09410 Genome accession   NZ_CP053790
Coordinates   1936106..1937467 (-) Length   453 a.a.
NCBI ID   WP_159304767.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1931106..1942467
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS09385 (GE022_009375) - 1932689..1933189 (-) 501 WP_338062210.1 MFS transporter -
  GE022_RS09390 (GE022_009380) - 1933170..1933847 (-) 678 WP_164228112.1 hypothetical protein -
  GE022_RS09395 (GE022_009385) - 1933851..1934297 (-) 447 WP_003045497.1 LytTR family DNA-binding domain-containing protein -
  GE022_RS09400 (GE022_009390) - 1934551..1935267 (-) 717 WP_164405444.1 TIGR00266 family protein -
  GE022_RS09405 (GE022_009395) - 1935421..1935915 (-) 495 WP_003045500.1 beta-class carbonic anhydrase -
  GE022_RS09410 (GE022_009400) radA 1936106..1937467 (-) 1362 WP_159304767.1 DNA repair protein RadA Machinery gene
  GE022_RS09415 (GE022_009405) - 1937565..1938011 (-) 447 WP_003045504.1 dUTP diphosphatase -
  GE022_RS09420 (GE022_009410) - 1938117..1938884 (-) 768 WP_164228111.1 epoxyqueuosine reductase QueH -
  GE022_RS09425 (GE022_009415) - 1939001..1940785 (-) 1785 WP_159304746.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49298.70 Da        Isoelectric Point: 6.6512

>NTDB_id=447237 GE022_RS09410 WP_159304767.1 1936106..1937467(-) (radA) [Streptococcus canis strain HL_77_2]
MAKKKATFICQECGYQSPKYLGRCPNCSAWSSFVEEVEVKEVKNARVSLTGEKSKPVKLKDVDNISYHRTQTDMAEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLANKGTVLYVSGEESAEQIKLRSERLGEIDNEFYLYAETNMQAIRSEVE
NLQPDFLIIDSIQTIMSPEITGVQGSVSQVREVTAELMQLAKTNNIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFEMQSAGLVEVLNPSQVFLEERLDGATGSAIVVTMEGSRPILAEVQSLVTPSIFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTSPQEAFLGEIGLTGEIR
RVTRIEQRINEATKLGFTKIYAPKNALQGIAIPKGIAVVGVTTVGQVLKAVFG

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=447237 GE022_RS09410 WP_159304767.1 1936106..1937467(-) (radA) [Streptococcus canis strain HL_77_2]
ATAGCAAAGAAAAAAGCGACCTTCATTTGTCAAGAGTGTGGCTACCAGTCACCCAAATATTTAGGGCGCTGTCCAAACTG
TTCAGCCTGGTCTTCTTTTGTGGAAGAAGTAGAGGTCAAAGAAGTCAAAAATGCTCGTGTTAGTTTGACAGGTGAGAAGA
GTAAACCTGTTAAACTAAAAGATGTGGATAATATCAGCTATCATCGGACACAGACCGATATGGCAGAATTTAACCGTGTT
CTCGGTGGCGGTGTCGTTCCAGGAAGTTTGGTCTTAATCGGTGGCGATCCAGGTATTGGAAAATCCACCTTGCTCTTGCA
GGTATCCACCCAGCTAGCCAATAAGGGAACTGTTCTCTATGTCTCCGGGGAAGAATCAGCAGAGCAGATTAAACTGCGCA
GTGAGCGTTTGGGGGAGATTGACAATGAATTTTACCTCTATGCTGAGACTAATATGCAGGCTATTCGATCAGAAGTTGAA
AACTTGCAGCCAGATTTCTTGATTATTGATTCTATTCAAACCATTATGAGTCCTGAGATTACAGGTGTTCAAGGATCAGT
TAGTCAGGTGAGAGAAGTCACTGCCGAATTGATGCAGTTGGCAAAGACCAATAATATTGCAACCTTTATTGTGGGGCATG
TCACCAAGGAAGGGACTTTGGCAGGACCTCGTATGTTAGAACACATGGTGGACACCGTTCTCTACTTTGAGGGGGAAAGG
CATCATACTTTTCGTATTTTGCGGGCTGTGAAAAATCGCTTTGGCTCTACGAATGAGATTGGTATTTTTGAAATGCAGTC
AGCCGGACTTGTTGAGGTTCTAAATCCAAGTCAAGTCTTTCTTGAAGAGCGTTTAGATGGTGCCACAGGTTCAGCCATCG
TGGTAACCATGGAAGGCAGCCGACCGATTTTAGCGGAGGTTCAATCTTTGGTAACACCATCTATTTTTGGCAATGCTAGA
CGAACCACAACGGGACTTGATTTCAATCGTGTGAGCCTAATCATGGCAGTCTTAGAAAAACGCTGTGGGCTTCTTTTACA
AAATCAAGATGCCTACCTTAAATCGGCTGGTGGTGTCAAATTGGATGAGCCTGCTATTGATTTGGCAGTCGCTGTGGCCA
TTGCTTCTAGTTACAAGGAAAAACCAACTAGCCCGCAAGAAGCTTTCTTAGGCGAGATTGGGTTAACAGGTGAGATTCGG
CGAGTGACCCGTATTGAACAACGGATTAATGAAGCAACTAAGCTAGGCTTTACTAAAATCTACGCCCCTAAAAATGCTCT
GCAAGGGATTGCTATTCCAAAAGGAATTGCTGTGGTTGGGGTGACTACCGTTGGCCAAGTGTTAAAAGCCGTTTTTGGCT
AA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)

AAA domain (AAA_25)

(57-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

86.726

99.779

0.865
  radA Streptococcus pneumoniae D39

86.726

99.779

0.865
  radA Streptococcus pneumoniae R6

86.726

99.779

0.865
  radA Streptococcus pneumoniae TIGR4

86.726

99.779

0.865
  radA Streptococcus mitis NCTC 12261

86.726

99.779

0.865
  radA Streptococcus mitis SK321

86.504

99.779

0.863
  radA Bacillus subtilis subsp. subtilis str. 168

61.05

100

0.616