Detailed information NTG0447235

Bioinformatically predicted

Overview

• Name: amiF
• Type: Regulator
• Locus tag: GE022_RS08870
• Genome accession: NZ_CP053790
• Coordinates: 1822960..1823892 (-)
• Length: 310 a.a.
• NCBI ID: WP_159305283.1
• Uniprot ID: -
• Organism: Streptococcus canis strain HL_77_2
• Function: internalize XIP (predicted from homology) Competence regulation

Genomic Context

Location: 1817960..1828892

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GE022_RS08845 (GE022_008835)	tsaD	1818447..1819463 (-)	1017	WP_164405131.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
GE022_RS08850 (GE022_008840)	rimI	1819453..1819878 (-)	426	WP_003045251.1	ribosomal protein S18-alanine N-acetyltransferase	-
GE022_RS08855 (GE022_008845)	tsaB	1819880..1820578 (-)	699	WP_164405132.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
GE022_RS08860 (GE022_008850)	-	1820863..1821093 (+)	231	WP_003045256.1	DNA-dependent RNA polymerase subunit epsilon	-
GE022_RS08865 (GE022_008855)	rnjA	1821095..1822777 (+)	1683	WP_125074144.1	ribonuclease J1	-
GE022_RS08870 (GE022_008860)	amiF	1822960..1823892 (-)	933	WP_159305283.1	ABC transporter ATP-binding protein	Regulator
GE022_RS08875 (GE022_008865)	oppD	1823889..1824938 (-)	1050	WP_159305284.1	ABC transporter ATP-binding protein	Regulator
GE022_RS08880 (GE022_008870)	-	1824950..1825981 (-)	1032	WP_093999474.1	ABC transporter permease	-
GE022_RS08885 (GE022_008875)	-	1825991..1826905 (-)	915	WP_164405190.1	ABC transporter permease	-
GE022_RS10865	-	1827143..1827586 (+)	444	Protein_1711	transposase	-

Sequence

Protein

• Length: 310 a.a.
• Molecular weight: 35178.08 Da
• Isoelectric Point: 6.9395

>NTDB_id=447235 GE022_RS08870 WP_159305283.1 1822960..1823892(-) (amiF) [Streptococcus canis strain HL_77_2]
MNDNRKKLVALKNVSLTFNKGKKNEVKAIDNVSFDIYEGEVFGLVGESGSGKTTVGRAILKLYDISEGEIIFNGETVSHL
KGKDLRTFRKDAQMIFQDPQASLNGRMKIRDIVAEGLDIHGLTTSKAEREERVQELLDLVGLNKDHLTRYPHEFSGGQRQ
RIGIARALAVKPKFIIADEPISALDVSIQAQVVNLMQKLQHKRGLTYLFIAHDLSMVKYISDRIGVMHWGKMLEIGTSDD
VYNHPIHPYTKCLLSAIPEPDPDKERQRVADVYDPSQELDGQERQMHEITPGHFVLATQEEADHYRRDYR

Nucleotide

• Length: 933 bp

>NTDB_id=447235 GE022_RS08870 WP_159305283.1 1822960..1823892(-) (amiF) [Streptococcus canis strain HL_77_2]
ATGAATGACAATCGAAAAAAATTAGTAGCCTTAAAAAATGTCTCCCTAACTTTCAATAAAGGCAAGAAAAACGAAGTTAA
GGCTATTGATAACGTTAGTTTTGATATTTATGAAGGCGAAGTGTTTGGACTGGTGGGGGAATCAGGGTCAGGGAAAACAA
CAGTTGGCCGTGCGATTCTGAAACTTTATGATATTAGTGAAGGAGAAATCATTTTTAATGGTGAAACTGTTTCTCACCTG
AAAGGGAAAGACTTGCGGACCTTCCGTAAGGATGCCCAAATGATTTTCCAAGACCCTCAGGCCAGTCTCAATGGTCGTAT
GAAAATTAGAGATATTGTGGCAGAAGGGCTAGATATTCATGGCCTGACAACTTCAAAAGCAGAGCGAGAAGAGCGGGTGC
AAGAACTCCTTGACTTGGTTGGATTGAATAAGGACCATTTAACCCGTTACCCACATGAATTTTCAGGAGGGCAACGTCAG
CGGATTGGCATTGCCCGCGCTTTGGCGGTTAAACCTAAGTTTATCATTGCTGACGAACCGATCTCAGCTCTCGATGTGTC
CATTCAGGCACAGGTGGTTAATTTGATGCAAAAACTTCAGCACAAACGTGGCTTGACCTATCTCTTTATTGCTCATGACT
TGTCCATGGTTAAATACATTTCTGACCGTATTGGCGTCATGCATTGGGGCAAAATGTTGGAGATTGGGACATCAGATGAT
GTTTACAATCATCCCATTCACCCCTACACCAAGTGTCTGCTTTCGGCTATTCCTGAGCCAGATCCTGACAAAGAACGGCA
ACGTGTGGCTGATGTTTACGACCCTAGTCAAGAATTGGACGGTCAGGAGCGCCAAATGCACGAAATTACCCCAGGGCATT
TTGTTTTAGCTACCCAAGAAGAAGCTGACCATTATCGACGTGACTATCGTTAA

Domains

Predicted by InterproScan.

• ABC transporter (ABC_tran) (30-181)

• Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY) (233-268)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
amiF	Streptococcus thermophilus LMD-9	53.443	98.387	0.526
amiF	Streptococcus thermophilus LMG 18311	53.115	98.387	0.523
amiF	Streptococcus salivarius strain HSISS4	52.787	98.387	0.519