Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ST4052_RS00345 Genome accession   NZ_CP065476
Coordinates   60637..61227 (+) Length   196 a.a.
NCBI ID   WP_002949053.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain 4052     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 55637..66227
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ST4052_RS00320 (ST4052_00320) - 56768..57223 (-) 456 Protein_42 DUF3021 domain-containing protein -
  ST4052_RS00325 (ST4052_00325) - 57220..57611 (-) 392 Protein_43 LytTR family DNA-binding domain-containing protein -
  ST4052_RS00330 (ST4052_00330) - 57834..58139 (+) 306 WP_002949050.1 hypothetical protein -
  ST4052_RS00335 (ST4052_00335) hexB 58191..60134 (+) 1944 WP_011225282.1 DNA mismatch repair endonuclease MutL Machinery gene
  ST4052_RS00340 (ST4052_00340) - 60264..60485 (+) 222 WP_041826940.1 hypothetical protein -
  ST4052_RS00345 (ST4052_00345) ruvA 60637..61227 (+) 591 WP_002949053.1 Holliday junction branch migration protein RuvA Machinery gene
  ST4052_RS00350 (ST4052_00350) - 61234..61788 (+) 555 WP_011225284.1 DNA-3-methyladenine glycosylase I -
  ST4052_RS00355 (ST4052_00355) cinA 61884..63155 (+) 1272 WP_011225285.1 competence/damage-inducible protein A Machinery gene
  ST4052_RS00360 (ST4052_00360) recA 63191..64345 (+) 1155 WP_002949056.1 recombinase RecA Machinery gene
  ST4052_RS00365 (ST4052_00365) spx 64522..64920 (+) 399 WP_002949058.1 transcriptional regulator Spx -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 35178.08 Da        Isoelectric Point: 6.9395

>NTDB_id=447235 ST4052_RS00345 WP_002949053.1 60637..61227(+) (ruvA) [Streptococcus thermophilus strain 4052]
MYDYIKGTLVKITAKHIVIETNGLGYIVTVANPYSFSDQMNQTIQVYLHQVIRDDAHLLFGFHTEDEKEVFLKLISVSGI
GPTTALAIVAVDDNQGLVAAIDNSDIKYLMKFPKIGKKTAQQMVLDLAGKFAELPAETTNTTANQTAGNQQLDEAMEALL
ALGYKSTELKKVKAFFEDTNETAEQYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=447235 ST4052_RS00345 WP_002949053.1 60637..61227(+) (ruvA) [Streptococcus thermophilus strain 4052]
ATGTATGATTATATCAAGGGCACCCTAGTAAAAATCACAGCCAAACACATTGTCATAGAAACAAATGGTCTAGGATATAT
TGTCACTGTGGCTAATCCCTACAGCTTTTCTGATCAAATGAATCAGACTATCCAAGTGTATCTTCATCAAGTTATTAGAG
ATGATGCCCACCTACTTTTTGGTTTTCATACTGAAGATGAGAAAGAAGTTTTTCTTAAGTTGATTTCTGTTTCTGGGATA
GGTCCGACGACTGCTCTAGCCATAGTGGCTGTGGATGATAATCAGGGACTTGTTGCTGCTATTGATAATAGTGACATCAA
ATACCTGATGAAATTTCCAAAGATTGGTAAAAAGACTGCTCAACAAATGGTTCTTGATCTGGCAGGAAAATTTGCAGAGT
TACCAGCAGAAACGACCAATACTACGGCAAATCAGACTGCAGGAAATCAACAGTTGGATGAAGCTATGGAAGCTTTGCTT
GCTCTTGGGTACAAATCCACAGAGCTTAAGAAAGTGAAAGCCTTCTTTGAGGATACCAATGAAACGGCAGAGCAATATAT
TAAGTCCGCTCTTAAAATGTTGATGAAGTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(30-181)

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiF Streptococcus thermophilus LMD-9

53.443

98.387

0.526
  amiF Streptococcus thermophilus LMG 18311

53.115

98.387

0.523
  amiF Streptococcus salivarius strain HSISS4

52.787

98.387

0.519