Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SELR_RS08395 Genome accession   NC_017068
Coordinates   1722745..1724133 (-) Length   462 a.a.
NCBI ID   WP_014424792.1    Uniprot ID   I0GRH1
Organism   Selenomonas ruminantium subsp. lactilytica TAM6421     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1717745..1729133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SELR_RS08380 (SELR_16470) mutY 1718453..1719556 (+) 1104 WP_014424789.1 A/G-specific adenine glycosylase -
  SELR_RS19375 (SELR_16480) - 1719656..1721698 (+) 2043 WP_014424790.1 methyl-accepting chemotaxis protein -
  SELR_RS08390 (SELR_16490) - 1721758..1722648 (-) 891 WP_014424791.1 LysR family transcriptional regulator -
  SELR_RS08395 (SELR_16500) radA 1722745..1724133 (-) 1389 WP_014424792.1 DNA repair protein RadA Machinery gene
  SELR_RS08400 (SELR_16520) - 1724306..1726804 (-) 2499 WP_014424794.1 ATP-dependent Clp protease ATP-binding subunit -
  SELR_RS08405 (SELR_16530) - 1726807..1727886 (-) 1080 WP_014424795.1 ATP--guanido phosphotransferase -
  SELR_RS08410 (SELR_16540) - 1727879..1728439 (-) 561 WP_014424796.1 UvrB/UvrC motif-containing protein -
  SELR_RS08415 (SELR_16550) - 1728452..1728904 (-) 453 WP_014424797.1 CtsR family transcriptional regulator -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49661.41 Da        Isoelectric Point: 7.5656

>NTDB_id=44722 SELR_RS08395 WP_014424792.1 1722745..1724133(-) (radA) [Selenomonas ruminantium subsp. lactilytica TAM6421]
MAKKKKTVFVCQDCGYEVPKWLGKCPGCGAWNTMVEEVVAPETGGSSGSGGLRLGLSDAQKPQPIGEVAIEDLPRFGTGS
GELDRVLGGGVIPGSMVLIVGDPGVGKSSLTLRVCADVARAGRSVLYVTGEESTRQVRMRGDRLKAIADRLYVVSETNME
TIEAHIENTKPDLLVIDSIQTVFKPEVQSAPGSVSQVRECAVDILRIAKGRGIAAFVIGHVTKEGNLAGPRVLEHIVDTV
LYFEGERNAEYRVLRAVKNRFGSTNELGLFEMRDVGLVDVPDASKLFLSDREGDSGTVIIPTVEGTRPLLVELQALVAPT
PYVPPRRTADSVDIKRIQLLLAVLEKRVHLQVGACDVYVKVAGGIKIDEPAADLGICVAMASSFANRQIRPKTIVFGEVG
LSGEVRAVGQADVRINEAKRLGFEHVVLPMKNYRQLTGEVKGIKLYGAETIGDALKLAMPRN

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=44722 SELR_RS08395 WP_014424792.1 1722745..1724133(-) (radA) [Selenomonas ruminantium subsp. lactilytica TAM6421]
TTGGCCAAAAAGAAAAAGACAGTCTTTGTCTGTCAGGATTGCGGCTATGAAGTGCCCAAGTGGCTCGGGAAATGTCCGGG
CTGTGGGGCCTGGAATACCATGGTGGAAGAGGTAGTAGCGCCGGAAACGGGCGGCAGTTCCGGCAGCGGCGGCCTGCGGT
TGGGCTTGTCGGATGCACAGAAGCCGCAGCCCATTGGTGAGGTAGCAATTGAAGACTTGCCGCGTTTTGGTACGGGTTCA
GGAGAGCTGGACCGGGTGCTGGGCGGCGGCGTGATTCCCGGTTCTATGGTGCTGATCGTGGGTGATCCCGGTGTGGGTAA
GTCCAGCCTGACCTTGCGCGTTTGCGCGGATGTGGCCCGTGCGGGCCGCAGTGTGCTCTATGTGACAGGCGAGGAAAGCA
CCCGGCAGGTGCGGATGCGCGGTGACCGGCTCAAGGCCATTGCGGATAGGCTCTATGTGGTCAGCGAGACCAATATGGAG
ACCATCGAAGCGCATATTGAAAATACCAAGCCGGATCTGCTGGTTATCGACTCTATCCAGACCGTCTTCAAGCCAGAAGT
GCAAAGCGCGCCGGGCAGCGTATCCCAGGTGCGGGAATGTGCTGTGGACATCCTGCGCATTGCCAAGGGCCGGGGCATTG
CGGCGTTTGTGATTGGCCATGTGACCAAAGAGGGCAACTTAGCCGGTCCCCGTGTGTTGGAACATATCGTGGATACCGTG
CTTTATTTCGAAGGAGAGCGCAATGCCGAATACCGGGTGCTGCGGGCGGTCAAGAACCGCTTCGGCAGCACCAATGAGCT
AGGGCTCTTTGAGATGCGTGATGTGGGGCTCGTGGATGTGCCGGATGCGTCCAAATTATTCCTGTCCGACAGGGAGGGGG
ATAGCGGTACGGTCATCATTCCTACAGTGGAAGGCACACGGCCCCTGCTCGTGGAACTGCAGGCCCTGGTTGCACCTACT
CCCTATGTGCCGCCAAGGCGCACGGCTGATTCTGTGGATATCAAGCGGATTCAGCTATTGCTAGCGGTGCTCGAAAAACG
CGTGCATCTGCAGGTCGGTGCCTGTGATGTCTATGTCAAGGTCGCAGGCGGCATCAAGATTGATGAACCTGCCGCCGACT
TAGGCATCTGCGTAGCCATGGCTTCGAGCTTTGCCAACCGGCAGATCCGGCCCAAGACCATTGTCTTCGGCGAAGTGGGG
CTGTCCGGCGAAGTCCGGGCCGTAGGTCAGGCAGATGTACGCATCAATGAGGCCAAGCGTTTAGGTTTTGAACATGTGGT
GCTGCCCATGAAGAATTATCGCCAGCTGACCGGTGAGGTAAAAGGAATCAAGCTTTATGGTGCGGAAACCATCGGTGATG
CGTTGAAATTAGCCATGCCCAGAAATTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(87-225)

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(356-458)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I0GRH1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.641

98.918

0.511
  radA Streptococcus pneumoniae Rx1

50.652

99.567

0.504
  radA Streptococcus pneumoniae D39

50.652

99.567

0.504
  radA Streptococcus pneumoniae R6

50.652

99.567

0.504
  radA Streptococcus pneumoniae TIGR4

50.652

99.567

0.504
  radA Streptococcus mitis SK321

49.782

99.134

0.494
  radA Streptococcus mitis NCTC 12261

49.782

99.134

0.494

Multiple sequence alignment