Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   GE022_RS02735 Genome accession   NZ_CP053790
Coordinates   542669..544471 (+) Length   600 a.a.
NCBI ID   WP_164405767.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 537669..549471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS02715 (GE022_002700) nagB 538787..539491 (+) 705 WP_159306015.1 glucosamine-6-phosphate deaminase -
  GE022_RS02720 (GE022_002705) - 539609..540325 (+) 717 WP_164405769.1 pseudouridine synthase -
  GE022_RS02725 (GE022_002710) - 540416..541579 (+) 1164 WP_164405768.1 MFS transporter -
  GE022_RS02730 (GE022_002715) - 541694..542656 (+) 963 WP_164227829.1 competence protein CoiA -
  GE022_RS02735 (GE022_002720) pepF 542669..544471 (+) 1803 WP_164405767.1 oligoendopeptidase F Regulator
  GE022_RS02740 (GE022_002725) - 544659..545099 (+) 441 WP_240327608.1 NADPH-dependent FMN reductase -
  GE022_RS02745 (GE022_002730) - 545323..545865 (+) 543 WP_164405766.1 GNAT family N-acetyltransferase -
  GE022_RS02750 (GE022_002735) - 545865..546524 (+) 660 WP_164227831.1 HAD-IA family hydrolase -
  GE022_RS02755 (GE022_002740) - 546542..546616 (+) 75 Protein_487 HAD family phosphatase -
  GE022_RS02760 (GE022_002745) - 546723..547931 (+) 1209 WP_164405765.1 OFA family MFS transporter -
  GE022_RS02765 (GE022_002750) - 547986..548693 (+) 708 WP_164405764.1 O-methyltransferase -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69348.35 Da        Isoelectric Point: 4.7152

>NTDB_id=447210 GE022_RS02735 WP_164405767.1 542669..544471(+) (pepF) [Streptococcus canis strain HL_77_2]
MTDNRSHLEEKYTWDLSTIFATDEMWEAEVSQLTTDVEASKEFAGHLLDSSANLLKITKMYLELARRVEKVYVYAHMKND
QDTTVAKYQEYQAKASGLYAKFSEVFSFYDPEVMTLSQEDYQTFLTETPELKGYNHFFDKLFQAREHVLSQAEEELLAGA
QEIFNGAEETFSILDNADIVFPTVKNDKGEDVELTHGNFISLMESKDRSVRQAAYEAMYSTYEQFQHTYAKTLQTNVKVQ
NYKARVHKYNSARQAAMAANFIPEAVYDTLLETVNKHLPLLHRYLKLRQEVLGLDELKMYDVYTPLSETDLAIGYDEALE
KAEKVLAVFGKDYADRVHRAFTERWIDVHVNKGKRSGAYSGGSYDTNAFMLLNWQDTLDNLYTLVHETGHSLHSTFTRET
QPYVYGDYSIFLAEIASTTNENIMTEALLNEVQDEKERFAILNHYLDGFRGTVFRQTQFAEFEHAIHQADQKGEVLTSEY
LNQLYADLNEKYYGLSKEDNHFIQYEWARIPHFYYNYYVYQYATGFAAASYLADKIVHGTQDDIDHYLAYLKSGNSDYPL
EVIAKAGVDMAKGDYLEAAFKVFEERLIELEALVAKGVHR

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=447210 GE022_RS02735 WP_164405767.1 542669..544471(+) (pepF) [Streptococcus canis strain HL_77_2]
ATGACTGATAATCGTAGCCACTTAGAAGAAAAGTACACTTGGGATTTGAGCACTATTTTTGCAACTGATGAGATGTGGGA
AGCAGAGGTGAGCCAATTAACTACTGATGTTGAGGCTTCTAAAGAGTTTGCTGGCCATTTGCTGGATTCTAGTGCTAATT
TGTTAAAGATTACAAAGATGTATTTAGAATTGGCTCGTCGTGTGGAGAAAGTTTATGTTTATGCTCACATGAAAAATGAT
CAAGACACTACCGTTGCCAAGTATCAAGAATACCAAGCTAAGGCTTCAGGTTTGTATGCCAAATTTAGTGAGGTCTTTTC
ATTCTATGATCCAGAAGTAATGACGCTTAGTCAAGAGGATTACCAAACTTTCCTTACGGAAACCCCTGAGTTGAAAGGGT
ATAATCATTTCTTTGACAAATTATTCCAAGCACGCGAACATGTTCTCAGTCAAGCGGAAGAGGAATTATTAGCAGGGGCT
CAAGAAATTTTTAATGGTGCGGAAGAAACCTTTAGTATTCTTGATAATGCGGACATTGTTTTCCCGACGGTCAAAAATGA
TAAAGGAGAAGACGTTGAATTAACCCATGGTAATTTCATTAGCTTAATGGAATCTAAAGATCGTAGCGTTCGCCAAGCTG
CTTATGAGGCAATGTATAGTACTTATGAACAGTTCCAGCATACTTATGCAAAAACCTTACAGACAAATGTGAAGGTTCAA
AACTACAAGGCGCGTGTTCATAAATATAATTCAGCCCGTCAGGCTGCCATGGCTGCTAACTTTATTCCAGAAGCTGTTTA
TGATACCTTGTTAGAAACGGTTAATAAACATTTGCCGCTGTTACATCGTTATTTGAAATTGCGTCAAGAGGTTCTTGGTT
TAGATGAATTGAAGATGTATGATGTTTACACACCGCTATCTGAAACAGATTTGGCTATTGGTTATGATGAGGCTTTGGAA
AAGGCAGAGAAGGTTTTGGCCGTTTTTGGTAAAGATTATGCAGACCGTGTGCACCGTGCTTTTACTGAACGCTGGATTGA
TGTTCATGTCAATAAAGGAAAACGTTCTGGAGCTTACTCAGGAGGTTCTTATGACACCAATGCCTTTATGCTATTAAACT
GGCAAGATACCTTGGATAATCTCTACACATTAGTTCATGAGACTGGTCACAGTTTGCATTCTACTTTTACGCGTGAAACA
CAGCCTTATGTGTATGGGGATTACAGTATTTTCTTGGCAGAAATTGCTTCAACGACGAATGAAAATATTATGACAGAAGC
TCTCTTAAACGAAGTTCAAGATGAGAAAGAACGTTTTGCGATTTTAAACCATTACCTTGATGGTTTCCGTGGAACAGTTT
TCCGTCAAACCCAATTTGCTGAGTTTGAACATGCTATTCACCAAGCTGATCAAAAAGGAGAAGTGTTAACAAGCGAATAC
CTTAACCAATTATACGCTGATTTAAATGAAAAATATTATGGTTTAAGTAAAGAGGATAATCATTTTATTCAGTATGAGTG
GGCACGTATTCCTCACTTCTATTACAATTATTATGTTTACCAATATGCAACAGGTTTTGCAGCCGCAAGCTATTTAGCAG
ATAAGATTGTTCACGGAACACAAGATGATATTGATCATTACTTGGCCTATCTCAAGTCAGGAAATTCTGATTACCCACTT
GAAGTGATTGCTAAAGCAGGCGTTGATATGGCAAAAGGGGACTATTTGGAAGCTGCTTTTAAGGTCTTTGAAGAACGCTT
AATAGAACTCGAAGCCCTCGTTGCAAAGGGTGTTCACCGTTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(112-181)

Peptidase family M3 (Peptidase_M3)

(202-581)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

71.786

99.833

0.717