Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   GE022_RS02285 Genome accession   NZ_CP053790
Coordinates   449283..450320 (+) Length   345 a.a.
NCBI ID   WP_164405427.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_77_2     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 444283..455320
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE022_RS10815 - 445128..445571 (-) 444 Protein_388 transposase -
  GE022_RS02265 (GE022_002255) arcC 445809..446759 (+) 951 WP_164405436.1 carbamate kinase -
  GE022_RS02270 (GE022_002260) asnA 447091..448083 (+) 993 WP_093999507.1 aspartate--ammonia ligase -
  GE022_RS02275 (GE022_002265) rsmD 448276..448815 (+) 540 WP_093999508.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  GE022_RS02280 (GE022_002270) coaD 448805..449296 (+) 492 WP_003044438.1 pantetheine-phosphate adenylyltransferase -
  GE022_RS02285 (GE022_002275) sepM 449283..450320 (+) 1038 WP_164405427.1 SepM family pheromone-processing serine protease Regulator
  GE022_RS02290 (GE022_002280) - 450625..451608 (+) 984 WP_164405426.1 LacI family DNA-binding transcriptional regulator -
  GE022_RS02295 (GE022_002285) rbsK 451601..452512 (+) 912 WP_159306032.1 ribokinase -
  GE022_RS02300 (GE022_002290) rbsD 452487..452885 (+) 399 WP_164228466.1 D-ribose pyranase -
  GE022_RS02305 (GE022_002295) - 452901..454379 (+) 1479 WP_164405425.1 sugar ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37716.58 Da        Isoelectric Point: 9.7859

>NTDB_id=447207 GE022_RS02285 WP_164405427.1 449283..450320(+) (sepM) [Streptococcus canis strain HL_77_2]
MKIIKKIKWWLVSLFALVALLIILFFPLPYYVEMPGGAYDIRSVLQVNGKEDKGKGSYQFVAVSLSRASLAQLLYAWLTP
FTEISSVEDTTGGYSDADYIRINQFYMETSQNAAIYQALTLANKPVTLDYKGVYVLDVSKDSTFKGALNLADTVTGVNDK
QFKSSTELVDYVSHLKLGDKVTVQFMSDSQPKSETGRIIKLKNGKNGIGIALTDHTKVRSEDKIAFSTQGVGGPSAGLMF
TLDIYDQIVKEDLRKGRIIAGTGTIGKHGEVGDIGGAGLKVVAAAEAGAEIFFVPNNPVDKALKKTHPKAISNYEEAKRA
AKQLKTKMKIVPVTNVQEALAYLRK

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=447207 GE022_RS02285 WP_164405427.1 449283..450320(+) (sepM) [Streptococcus canis strain HL_77_2]
ATGAAAATAATTAAAAAAATCAAATGGTGGCTGGTTAGCCTTTTTGCTCTAGTAGCTTTGCTGATTATCCTCTTTTTCCC
TCTACCTTATTACGTTGAAATGCCTGGCGGCGCTTATGATATTCGCTCTGTTTTACAAGTTAATGGAAAAGAAGATAAAG
GGAAGGGATCTTATCAATTTGTAGCCGTTAGCCTTAGCCGCGCCAGTTTGGCACAGTTATTGTATGCTTGGTTAACCCCT
TTTACCGAAATCAGTTCCGTTGAAGACACTACGGGTGGTTACAGTGATGCTGATTATATCCGCATTAACCAATTCTACAT
GGAAACCTCGCAAAATGCAGCGATCTATCAGGCATTAACCTTGGCGAACAAACCCGTTACGTTGGATTACAAAGGGGTTT
ACGTATTAGATGTTAGCAAAGACTCAACCTTCAAAGGTGCCTTGAATTTAGCAGATACTGTCACTGGTGTGAATGACAAG
CAATTTAAGAGTTCGACAGAGCTTGTGGACTATGTTTCTCATTTAAAACTTGGGGATAAAGTAACTGTTCAGTTTATGAG
TGATAGTCAGCCCAAGTCTGAGACAGGCCGTATTATTAAACTTAAAAACGGTAAAAATGGTATTGGGATTGCTCTTACAG
ACCATACTAAAGTTAGGTCAGAGGATAAGATCGCATTTAGCACGCAAGGTGTTGGTGGTCCCAGTGCTGGTTTGATGTTT
ACCCTTGATATTTATGACCAAATTGTCAAGGAGGATCTTCGTAAAGGTCGTATCATCGCAGGTACAGGAACGATTGGCAA
ACATGGCGAAGTGGGAGATATTGGTGGCGCAGGCCTTAAAGTCGTAGCTGCAGCAGAAGCAGGTGCTGAGATTTTCTTTG
TTCCTAACAATCCTGTGGACAAGGCCTTAAAAAAAACGCATCCCAAAGCCATCAGCAACTATGAAGAAGCTAAGCGAGCA
GCTAAGCAATTAAAAACTAAAATGAAGATTGTGCCTGTGACCAATGTTCAGGAAGCTTTGGCTTATCTTCGGAAATGA

Domains

Predicted by InterproScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(233-304)

PDZ domain (PDZ_2)

(130-191)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

71.884

100

0.719