Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptA   Type   Regulator
Locus tag   GE023_RS08570 Genome accession   NZ_CP053789
Coordinates   1724677..1725402 (-) Length   241 a.a.
NCBI ID   WP_159306111.1    Uniprot ID   -
Organism   Streptococcus canis strain HL_98_2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1719677..1730402
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GE023_RS08535 (GE023_008530) - 1719720..1720016 (-) 297 WP_003044945.1 YlxR family protein -
  GE023_RS08540 (GE023_008535) nusA 1720032..1721189 (-) 1158 WP_159304445.1 transcription termination factor NusA -
  GE023_RS08545 (GE023_008540) rimP 1721359..1721877 (-) 519 WP_172756887.1 ribosome maturation factor RimP -
  GE023_RS08555 (GE023_008550) trmB 1722159..1722794 (-) 636 WP_093999293.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  GE023_RS08560 (GE023_008555) ccrZ 1722794..1723585 (-) 792 WP_003044956.1 cell cycle regulator CcrZ -
  GE023_RS08565 (GE023_008560) - 1723640..1724674 (-) 1035 WP_003044958.1 ABC transporter permease -
  GE023_RS08570 (GE023_008565) pptA 1724677..1725402 (-) 726 WP_159306111.1 ABC transporter ATP-binding protein Regulator
  GE023_RS08575 (GE023_008570) - 1725474..1725893 (+) 420 WP_003044965.1 HIT family protein -
  GE023_RS08580 (GE023_008575) - 1725890..1726207 (+) 318 WP_003044966.1 hypothetical protein -
  GE023_RS08585 (GE023_008580) - 1726256..1727527 (-) 1272 WP_125074154.1 LCP family protein -
  GE023_RS08590 (GE023_008585) - 1727536..1728060 (-) 525 WP_159306112.1 GNAT family N-acetyltransferase -
  GE023_RS08595 (GE023_008590) tsaE 1728053..1728496 (-) 444 WP_039994873.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  GE023_RS08600 (GE023_008595) - 1728683..1730143 (-) 1461 WP_159306113.1 NCS2 family permease -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26513.81 Da        Isoelectric Point: 4.7502

>NTDB_id=447177 GE023_RS08570 WP_159306111.1 1724677..1725402(-) (pptA) [Streptococcus canis strain HL_98_2]
MLNIENLTGGYLNIPVLKEVSFSVGNGELVGLIGLNGAGKSTTINEIIGFLKPYKGEISIDGLTLAENPADYRKKIGFIP
ETPSLYEELTLAEHINTVAMAYDIDVELAQKRAEPFLNMFRLADKLDWFPVHFSKGMKQKVMIICAFVIDPSLFILDEPF
LGLDPLAISDLIKTLEIEKAKGKSILMSTHVLDSAEKMCDRFVILHHGQVRAQGTLAELQATFGDPSASLNDIYLALTKE
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=447177 GE023_RS08570 WP_159306111.1 1724677..1725402(-) (pptA) [Streptococcus canis strain HL_98_2]
ATGTTAAACATTGAAAATCTAACGGGAGGCTACCTTAATATTCCCGTTTTAAAAGAGGTCTCATTTTCTGTTGGCAATGG
AGAATTGGTCGGTTTAATCGGGTTAAATGGAGCTGGAAAGTCAACGACCATCAATGAAATTATTGGTTTTTTAAAACCCT
ACAAGGGAGAAATCTCCATTGACGGCCTTACGCTGGCTGAAAATCCAGCAGACTACCGTAAAAAAATTGGTTTTATCCCA
GAAACTCCTAGTCTTTACGAAGAATTAACCTTAGCAGAGCATATTAATACTGTGGCTATGGCCTACGATATTGATGTGGA
GTTGGCTCAAAAACGAGCAGAACCGTTTTTAAATATGTTTCGACTGGCTGATAAGCTAGACTGGTTTCCTGTGCATTTTT
CAAAGGGCATGAAGCAAAAAGTCATGATTATTTGTGCTTTTGTGATTGATCCCAGCCTATTTATTCTTGATGAGCCATTT
TTAGGGTTAGATCCACTAGCTATTTCGGACTTGATTAAGACTTTAGAGATTGAAAAAGCCAAAGGCAAATCGATTTTAAT
GAGTACTCACGTGCTAGACTCTGCTGAAAAAATGTGTGATCGTTTTGTGATTTTGCACCATGGTCAGGTGCGTGCTCAAG
GAACTCTTGCTGAGTTACAAGCGACCTTTGGAGATCCTTCGGCTAGCTTAAACGATATTTATTTGGCATTGACAAAAGAG
GGCTAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(17-160)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptA Streptococcus salivarius strain HSISS4

75.732

99.17

0.751
  pptA Streptococcus thermophilus LMD-9

74.895

99.17

0.743